Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00253 ATGTCTTCAACGTCAACAAACAAGACTGTGTGTTCCAAGACCAGCTTTGACCGATCGAAACATGGGGCTCATGTGGTTGCGCAGACCCCAATTGATGCAAAGCTTCATGTAGACTTTGAAGGTTCGGAAAGGTTGTTCGATTACTCTGCATCGGTTGATTTCAATGCCGCTTGTTCCACTAGCAATGTTCATGCTTCCACTGTACAGTCATACCTTCTAAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGACGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCTCCCGAAATGTTGGACTTGGCCCCACACGCTGTGCCTAACATCGAGCAGCAAGAAGCTTTAACTTTTGGAACAGATGTACGAACTCTTTTTCGTTCACCCGGAGCTGCAGCTTTGCAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATTCTAGTCCATTGTAGAACTTCTGGTAAACCGTTTTATGCAATTTTGCATCGAGTAGACGTGGGATTAATTATAGATCTGGAACCGGTGAACCCAGCTGATGTGCCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCCAAAGCCATCTCAAAATTGCAGAACTTGCAAAGTGGGAATATATCTCTTTTGTGTGAGGTATTGGTTAAGGAGGTTAGCGATTTGACAGGTTATGATCGAGTAATGGTGTATAAATTCCACGATGATGAACATGGAGAAGTTGTAGCTGAGTGCTGTCGATCAGACTTAGAACCATATTTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTGTTTTTGAAGAATAAAGTTAGAATGATATGTGATTGTTTGGCACCTCCGGTTAAAGTGCTTCAAGACAGGAGATTAGCTCAGCCATTAAGTTTATGTGGGTCTGCATTGAGGGCTCCCCATGGTTGTCATGCTCGATATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACGATCAATGAGAATGATAGTGAATCAGAAAATGATCAAGAAAAGGATAGAAAATTGTGGGGTTTAGTAGTTTGCCATCACACCAGCCCTAGGTTTGTTCCATTTCCTTTGCGATATGCTTGTGAATTCTTGATTCAAGTATTTGGTATACAGATTAACAAAGAGGTGGAGTTGCAAGCTCAGTTGAAGGAAAAACACATCTTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGATGCTCCGGTAGGAATTGTTACTCAATCTCCTAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGTCACTTGGAGTCACCCCCACAGAGGCGCAAATTAGAAATATAGCTGACTGGCTTCTCAAAGACCATAGTGGAAGCACAGGTTTAAGTACTGATAGCCTTACTGAAGCTGGTTTCTATGGTGCTTCTGCGCTTGGTGATGAGATTTGTGGAATGGCTGCTGTTAGGATCACATCTAAGGACTTCCTTTTCTGGTTTCGGTCACATATGGCTAAGGAAATCAGGTGGGGTGGTGCAAAACATGATCCTAGTGATGAGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATTCATTCACTGCAATTAATCTTACGAGGTTCTTTACAGGATGAAATTGAAGAAGAATGCAAGGTGATTACAACTGTCCCACCAGTTGATGAGAAGACGCAACAATTGGATGAATTGCGCGTCATTACAAATGAGATGGTTCGCCTAATTGAAACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTTGGCAAGATCAATGGGTGGAACTCCAAAGCCACTGAGCTTACAGGATTGGCCATCCAGGAAGCCATTGGCATGCCCTTAGTTGATTGTGTGGTGAATGATTCTGTTAAGGTGGTAAAGAAAATGCTTTCCCTGGCCATTCAAGGCATTGAAGAGAAGAACGTTGAAATCAAACTCAAAACATTTGGAACTGCGGTACAAAATGGTCCAGTGATCTTAGAAGTTAACTCATGTTGTAGCCGAGACTTAAACAATAATGTTGTAGGAATTTCTTTTATAGGGCAGGATGTAACGAAGCAAAAACTGGTAATGAACCAATACACCCAAATCCAAGGTGATTACACAGGGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGGCCGATGGCGAGGGCCGGTGCTTGGAGTGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGTAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTTGAAAACTTCGGATGCCGTGTGAAAGATCACACGTTGACCAAGCTTAGGATAATACTGCATAGAGTAATTTCAGGCCAGGATACAGAGAAATTTTTGTTTCGGTTCTGTGATCGTGAAGGAAACTACGTCGAATCATTGCTTACTGCAAGCAAAAGGACTGATACAGAGGGTACTGTCACTGGGGTTTTCTTCTTCTTGCACGTGGCTAGTCCAGAGCTTCAATATGCTTTGGAGATGCAGCGGATTTCCGAACAAGCTACAGCGGAAAATCTCCATAAATTGGCATATCTGCGTCAAGAAATTCGAAAACCCCTTGATGGGATTGCACTTATGCAGAATCTAATAAGTTCATCTGACTTAAGCATAGAGCAAAAACAGCTAATTAAATTGAACACTTTGAGTCGAGAACAATTACACAAGATTGTACATGATACTGATATCCAGAGTATTGAGGAATGTTACATGGAAACAAACTGTAGTGAATTCAACCTTGGAGATGTTCTTGATGTTGTAACGAATCAAACCATGACGTTGAGCCAAGAGCGTGAGGTGAAGATCATTTGTGAATCACTTGCCGATGTGTCATCTCTGCACTTATATGGAGATAACTTGAGGCTACAGCAAGTGCTCTCTGAGTTCTTGACGAACACGCTTCTCTTCACTTGCAAAGAATCGTCTGTCATCTTTAAAGCAACTCCAAGGAAGGAGCGCATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGGATCACCCATCCCACTCCAGGAATTCCTGCACACTTAATCCAAGAGATGTTCGACGACAACAACGATAGCTCAAAGGAAGGTCTTGGCTTATACATAAGCCAGAAGCTTGTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCGAAACCTCGTCATTCATCATCCTCATAGAATTCCCCTTAGTAGAGCATGTTGCTAGATGA 3360 42.29 MSSTSTNKTVCSKTSFDRSKHGAHVVAQTPIDAKLHVDFEGSERLFDYSASVDFNAACSTSNVHASTVQSYLLNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCRTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQNLQSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYFGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLAQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQAQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYFRKKFWSLGVTPTEAQIRNIADWLLKDHSGSTGLSTDSLTEAGFYGASALGDEICGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPSDEDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEIEEECKVITTVPPVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQEAIGMPLVDCVVNDSVKVVKKMLSLAIQGIEEKNVEIKLKTFGTAVQNGPVILEVNSCCSRDLNNNVVGISFIGQDVTKQKLVMNQYTQIQGDYTGIMRNPSALIPPIFMADGEGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLENFGCRVKDHTLTKLRIILHRVISGQDTEKFLFRFCDREGNYVESLLTASKRTDTEGTVTGVFFFLHVASPELQYALEMQRISEQATAENLHKLAYLRQEIRKPLDGIALMQNLISSSDLSIEQKQLIKLNTLSREQLHKIVHDTDIQSIEECYMETNCSEFNLGDVLDVVTNQTMTLSQEREVKIICESLADVSSLHLYGDNLRLQQVLSEFLTNTLLFTCKESSVIFKATPRKERIGKGIHIVHLELRITHPTPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYLREAETSSFIILIEFPLVEHVAR* 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1981713 1987819 + CsaV3_7G002530.1 Csa07g00253 535816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00253 1119 Pfam PAS fold 756 867 IPR013767 GO:0006355
Csa07g00253 1119 Pfam PAS fold 616 730 IPR013767 GO:0006355
Csa07g00253 1119 SMART HKATPase_4 1001 1115 IPR003594 -
Csa07g00253 1119 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Csa07g00253 1119 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Csa07g00253 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Csa07g00253 1119 Pfam GAF domain 220 398 IPR003018 GO:0005515
Csa07g00253 1119 Gene3D - 200 559 IPR029016 -
Csa07g00253 1119 Gene3D PAS domain 75 322 - -
Csa07g00253 1119 PIRSF Phytochrome_conventional 2 1119 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Csa07g00253 1119 SUPERFAMILY GAF domain-like 406 586 - -
Csa07g00253 1119 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 958 1109 IPR036890 -
Csa07g00253 1119 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Csa07g00253 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 733 IPR035965 -
Csa07g00253 1119 Gene3D - 934 1107 IPR036890 -
Csa07g00253 1119 CDD PAS 757 867 IPR000014 -
Csa07g00253 1119 Gene3D PAS domain 601 744 - -
Csa07g00253 1119 SMART gaf_1 219 408 IPR003018 GO:0005515
Csa07g00253 1119 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Csa07g00253 1119 SUPERFAMILY GAF domain-like 199 395 - -
Csa07g00253 1119 PANTHER PHYTOCHROME C 1 1115 - -
Csa07g00253 1119 TIGRFAM sensory_box: PAS domain S-box protein 620 734 IPR000014 -
Csa07g00253 1119 TIGRFAM sensory_box: PAS domain S-box protein 760 866 IPR000014 -
Csa07g00253 1119 Gene3D - 403 576 IPR043150 -
Csa07g00253 1119 Gene3D PAS domain 759 870 - -
Csa07g00253 1119 CDD HATPase_Phy-like 1000 1111 IPR044767 -
Csa07g00253 1119 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Csa07g00253 1119 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1107 IPR003594 -
Csa07g00253 1119 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Csa07g00253 1119 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Csa07g00253 1119 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Csa07g00253 1119 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Csa07g00253 1119 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Csa07g00253 1119 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Csa07g00253 1119 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Csa07g00253 1119 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Csa07g00253 1119 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355|GO:0009584
Csa07g00253 1119 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355|GO:0009584
Csa07g00253 1119 Pfam PAS fold 71 186 IPR013654 GO:0006355
Csa07g00253 1119 SMART pas_2 615 681 IPR000014 -
Csa07g00253 1119 SMART pas_2 745 815 IPR000014 -
Csa07g00253 1119 CDD PAS 624 730 IPR000014 -
Csa07g00253 1119 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Csa07g00253 1119 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1115 - -
Csa07g00253 1119 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01519 Csa-Chr3:11284430 Csa07g00253 Csa-Chr7:1981713 0 dispersed
Csa06g02220 Csa-Chr6:20015890 Csa07g00253 Csa-Chr7:1981713 0 dispersed
Csa06g02224 Csa-Chr6:20046075 Csa07g00253 Csa-Chr7:1981713 0 dispersed
Csa07g00253 Csa-Chr7:1981713 Csa02g00710 Csa-Chr2:5766703 8.89E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00253 - - csv:101211915 2187.53