Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00262 ATGGCCACCTCTGCTATTCAACAATCCGCCTTCGCCGGCCAGACTGCCTTGAAGCAATCCAATGAGCTTGTCCGAAAGGTCGGTGCTCTCGGTGGCGCCCGCTTCACCATGAGGCGGACAGTTAAGAGTGCTCCACAGAGCATTTGGTATGGACCTGATCGCCCAAAGTACTTGGGACCATTCTCTGAACAAACACCATCTTACCTGACTGGAGAGTTCCCTGGTGACTATGGATGGGACACAGCCGGTCTGTCAGCAGATCCCGAGACTTTTGCAAAGAACCGTGAGCTTGAGGTGATCCACTCCCGATGGGCCATGCTTGGTGCGTTAGGTTGTGTCTTCCCTGAACTCCTTGCAAAGAATGGCGTCAAGTTCGGTGAATCAGTTTGGTTCAAGGCTGGTTCTCAGATCTTCTCTGAGGGTGGTCTAGACTACCTTGGCAACCCAAACCTTATCCATGCTCAGAGTATCCTTGCAATCTGGGCTTGCCAGGTTGTGCTCATGGGATTTGTTGAAGGTTACCGTGTTGGTGGCGGTCCCCTTGGTGAAGGACTAGACCCAATTTACCCAGGAGGTGCCTTCGACCCACTCGGATTGGCAGATGACCCAGATGCATTTGCTGAGTTGAAGGTCAAGGAACTTAAGAACGGAAGGCTGGCAATGTTCTCCATGTTCGGATTCTTTGTCCAGGCTATCGTCACCGGCAAGGGTCCTATTGAGAATCTCTTTGACCATGTCGCAGATCCTGTTGCCAACAATGCATGGGCTTATGCCACCAACTTTGTCCCCGGAAAATGA 798 52.01 MATSAIQQSAFAGQTALKQSNELVRKVGALGGARFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2041428 2043365 + CsaV3_7G002620.1 Csa07g00262 535825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00262 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Csa07g00262 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 1 265 - -
Csa07g00262 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Csa07g00262 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Csa07g00262 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00595 Csa-Chr3:5129160 Csa07g00262 Csa-Chr7:2041428 1.03E-125 dispersed
Csa04g02748 Csa-Chr4:26342869 Csa07g00262 Csa-Chr7:2041428 1.09E-62 dispersed
Csa06g03766 Csa-Chr6:29983572 Csa07g00262 Csa-Chr7:2041428 6.13E-154 dispersed
Csa06g03767 Csa-Chr6:29986415 Csa07g00262 Csa-Chr7:2041428 1.26E-153 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00262 K08913 - csv:101212963 546.584