Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00267 ATGGTTTCTACAGGGGACGGGGACCAGTTAGAGAATGAAGTTGATTCCGATCAATTGGATCATGAAAACAGTTCAGATAGTCAACCGCAAGCGTCTCAGGACGATCCTGGTGGAACTAATGCATCGAAATCAGATCACAAATGCACAGGGGCTTCCAGTAATACACTTGAAGAAGCTGTCAAGCAGCCTGAGGTTACAATAGCACTAGTGGATCGAGGAGAAATCTCTAGTATAGTGACTGAGAAAGTGACCCATAAGCCAATTACTGCAGAACAGAATCCCCTATCTGTTTTGAAAGTATGTATTACCTCCAGTATACGAGAGAAAGTATCAGAGGATGGATTTAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGCAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGTACTCATGATGGGAAAATCACAGACACTGTTTACTTTGGTCAGCACGATCATCCTAAACCTCAACCTCATATTCCAGTTCCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGGTGAACATGCTTCTGGAAATTCTCAAGATAAAACCTCCATTGCACTTAGCCAGACACCTCAACAAACTGAGCTTGCTGATATGCGTCAACCACCATCAGTTATAGCCAGTGATAATGTAAAAGATGAAGTTTCGAAAAGGTCTAGGACTAATGATGAGGTTGATAGTGACGATACACCAGACCTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGTGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTTGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGATCCCAAAATAGTGCTTACCACATATGAGGGCCAGCATGACCATGTTGTGCCTCCTATTAGAACAGTGACGTTGAACTCAGTTGGATCCACAACAGCCCAGAGTGACGAAACAAAACCAAAACCGGTTAGTACGGTGGTTCATGCTAGTAAGGATCCGCGAAGTGATTCAAGTTCTGAAGGCAAATTGATTGAAGAGAATGGCAAGTTGAATGCAACAGAAACAAGTGATGACATTATACTCGATGGGGTGGTGGTAAATCCTAGCCCAGGAGTTGCGAGTGAACAAAATAAGCAGCTGAAAGTAGCAATCGAAAGCTAA 1302 42.93 MVSTGDGDQLENEVDSDQLDHENSSDSQPQASQDDPGGTNASKSDHKCTGASSNTLEEAVKQPEVTIALVDRGEISSIVTEKVTHKPITAEQNPLSVLKVCITSSIREKVSEDGFNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPVPVGVVTMVEEKLGEHASGNSQDKTSIALSQTPQQTELADMRQPPSVIASDNVKDEVSKRSRTNDEVDSDDTPDLKREKKRCNIDVTTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKFVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKIVLTTYEGQHDHVVPPIRTVTLNSVGSTTAQSDETKPKPVSTVVHASKDPRSDSSSEGKLIEENGKLNATETSDDIILDGVVVNPSPGVASEQNKQLKVAIES* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2056294 2058276 - CsaV3_7G002670.1 Csa07g00267 535830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00267 433 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 7 396 IPR044810 GO:0003700
Csa07g00267 433 MobiDBLite consensus disorder prediction 1 57 - -
Csa07g00267 433 MobiDBLite consensus disorder prediction 228 253 - -
Csa07g00267 433 ProSiteProfiles WRKY domain profile. 280 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00267 433 SUPERFAMILY WRKY DNA-binding domain 107 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa07g00267 433 MobiDBLite consensus disorder prediction 355 402 - -
Csa07g00267 433 MobiDBLite consensus disorder prediction 190 253 - -
Csa07g00267 433 Pfam WRKY DNA -binding domain 286 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00267 433 Pfam WRKY DNA -binding domain 112 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00267 433 SMART WRKY_cls 285 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00267 433 SMART WRKY_cls 111 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00267 433 MobiDBLite consensus disorder prediction 23 57 - -
Csa07g00267 433 Gene3D WRKY domain 272 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa07g00267 433 PANTHER WRKY TRANSCRIPTION FACTOR 1 7 396 - -
Csa07g00267 433 Gene3D WRKY domain 96 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa07g00267 433 ProSiteProfiles WRKY domain profile. 106 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00267 433 MobiDBLite consensus disorder prediction 194 216 - -
Csa07g00267 433 SUPERFAMILY WRKY DNA-binding domain 277 345 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03237 Csa-Chr3:29704664 Csa07g00267 Csa-Chr7:2056294 2.89E-16 dispersed
Csa06g01599 Csa-Chr6:13759828 Csa07g00267 Csa-Chr7:2056294 2.48E-15 dispersed
Csa07g00267 Csa-Chr7:2056294 Csa05g03014 Csa-Chr5:30396040 2.26E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32250 PF03106 WRKY 5.10E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00267 K18834 - csv:101212482 870.537