Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00312 ATGCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTTCTTCCATTGATCTCTTCTCTCAATCAAGAAGGATTGTATCTTCAACGAGTCAAACTCGGTCTCTCCGATCCCACTCACTCCCTCTCTTCATGGAACCCTCGCGACAACACTCCCTGCAACTGGTCCGGCATCACTTGCGATTCCCTCACTCATTCTGTCATCGCCGTCGACCTCTCCAACTTTCAGCTCTCCGGACCCTTTCCCACTTTTATTTGTCGTCTTCCTTCTCTTTCTTCGCTCTCCCTCTCTAATAACGCTATTAACGCTTCTCTTTCCGACGATGTTGCTTCCTGTTCTGGCCTTCACTTCCTTAACATGTCTCAGAATCTTCTTGCTGGTTCTATTCCCGATGGGATTTCCAAGATCTTCAATCTTCGTTCTCTGGATCTCTCTGGAAATAATTTTTCTGGGGAGATTCCCACGAGTTTCGGTGGGTTTACGCAACTTGAGACGCTGAATTTGGTTGATAATCTATTGAATGGAACTATTCCGGGGAGTTTGGGTAACGTTTCGAGTTTGAAAGAGCTTCAACTTGCTTATAATCCGTTTATGCGGAGTGAGATTCCGAGTGCATTCGGTAACTTGACGAAGCTGGAGGTTCTCTGGCTTGCTAATTGTAATCTTGCCGGTCAGATTCCGGCAACCATTGGCGGGATGACTCGGCTTAAGAATCTTGACTTGTCTAATAATAGACTCAGTGGGTCGATTCCGGTTTCACTCACTCAAATGAAAAGTTTAGTTCAAATTGAACTTTTTAACAACTCGCTCTCTGGGGAGTTGCCTTTACGACTGTCTAATTTAACTTCACTTCGACGAATTGATGTGTCCATGAACCACTTGACGGGAATGATTCCGGATGAACTGTGCGCATTACAGCTTGAGTCGTTAAATTTGTTCGAGAATCGATTGGAAGGCCCTTTGCCGGAGAGTATCGTTAATTCCCCATACTTGAATGAGCTCAAATTGTTTAACAACAAGCTTAGTGGACAGTTACCTAGTAAACTCGGCCAAAACTCGCCATTAGTTCATCTTGATGTTTCATACAACGGGTTTTCTGGCGGAATTCCTGAAAACTTGTGTGCAAAAGGGAAATTGGAAGAGCTTATATTGATTTACAATTCGTTTTCTGGAAGAATCCCGGCAAGCCTTGGAAAATGCACCAGCTTAAGCCGGATTCGAATGAGGAACAACAGACTCTCTGGTCCGGTTCCTGATGAATTTTGGGGTCTGCCCAATGTGTATTTGCTTGAGCTCGTTGAGAATTCTCTTTCTGGGTCTATTTCTTCGATGATATCTGGCGCTAAGAATCTCTCTATTCTGGTGATTTCAGAAAATCAATTTTCAGGGTCAATTCCTAACGAGATTGGGTTGCTAAGCAATCTGACTGAACTCTCAGGTAATGACAATATGTTTTCCGGTCGAATCCCAGGAGCTTTGGTAAAGTTAAACCTGTTGAGCACACTCGATCTAAGCAAGAACAAACTTTCTGGTGAATTGCCAATGGGAATTGGAGCTTTGAAAAGGCTAAATGAGTTAAATTTAGCAAGTAATAGACTATCTGGCAATATCCCGAGTGAAATTGGAAACCTTCCAGTGCTTAATTATCTTGATCTCTCTAGTAATCATCTCAGTGGAAGTATACCTCTTGAATTGCAGAATTTGAAACTGAATTTACTAAATTTGTCGAACAATCTGTTATCAGGTGTACTTCCTCCTCTTTATGCTGAGGATATTTACAGAGATAGCTTCCTGGGTAATCCAGGTTTGTGCAATAACGACCCAAGTCTTTGTCCTCACGTTGGAAAAGGAAAAAACCAAGGCTATTGGCTTCTCAGGTCCATTTTTCTACTTGCTATCATTGTTTTTGTTGTTGGGGTCATTTGGTTTTTCTTCAAGTACAAGGAATTCAAGAAGAGTAAGAAAGGAATTGCCATTTCCAAGTGGAGATCGTTTCATAAACTTGGTTTTAGTGAATATGAAATAGCAGACTGTCTCAGTGAAGACAAAGTCATTGGAAGTGGAGCGTCCGGCAAAGTGTACAAAGTCGTGCTAAAAAATGGGGAGGTTGTGGCGGTGAAGAAGCTATGGCAAGGAACAAGAAAAGAGGACACAAGTTTGGAGTCAGAGAAAGATGGATTTGAGGCTGAAGTCGAGACTTTAGGGAAGATTCGTCACAAGAATATTGTAAGGTTATGGTGCTGCTGCAACACAGGCAACTGCAAGCTGCTTGTTTATGAGTACATGCCCAATGGAAGTTTGGGAGATTTGTTGCACGGCAGCAAGAAGCGCTTTCTGGATTGGCCTACAAGGTATAAAGTAGTTTTGGATGCAGCTGAAGGGCTTTCTTACCTGCATCACGACTGTGCTCCTCCAATTGTTCATAGGGACATTAAGTCCAACAATATATTGCTTGATTCTGAGTTTGGGGCTAGAGTTGCTGACTTTGGATTGGCAAAGTTTTTGAATGCTGGCAAGGGATCAGAATCTATGTCTGTCATTGCTGGTTCTTGTGGTTATATTGCACCAGAATATGCTTATACTTTAAGAGTAAACGAAAAGAGTGACATCTACAGCTTTGGGGTGGTGATTTTAGAGCTAGTGACAGGACGGCCACCAAATGATCCAGAATTTGGAGATAAAGACTTGGCAAAGTGGGTATATGCTACTGTCGATGGCAGAGAACTCGACCGAGTAATTGATCCTAAGCTCGGTTCTGAATACAAGGAAGAAATATACAGAGTCCTTGATGTTGGACTGCTTTGCACAAGCTCACTCCCTATCAACCGCCCCTCAATGAGGAGAGTCGTTAAACTACTGCAGGAGGCTGCCATAGAAACCAGACCACCCGCCATTGTTAAAAAGGAAGTCAAACTTTCTCCATATTTGTCCTAG 2940 42.86 MPPPPPLLLLLLLLPFLPLISSLNQEGLYLQRVKLGLSDPTHSLSSWNPRDNTPCNWSGITCDSLTHSVIAVDLSNFQLSGPFPTFICRLPSLSSLSLSNNAINASLSDDVASCSGLHFLNMSQNLLAGSIPDGISKIFNLRSLDLSGNNFSGEIPTSFGGFTQLETLNLVDNLLNGTIPGSLGNVSSLKELQLAYNPFMRSEIPSAFGNLTKLEVLWLANCNLAGQIPATIGGMTRLKNLDLSNNRLSGSIPVSLTQMKSLVQIELFNNSLSGELPLRLSNLTSLRRIDVSMNHLTGMIPDELCALQLESLNLFENRLEGPLPESIVNSPYLNELKLFNNKLSGQLPSKLGQNSPLVHLDVSYNGFSGGIPENLCAKGKLEELILIYNSFSGRIPASLGKCTSLSRIRMRNNRLSGPVPDEFWGLPNVYLLELVENSLSGSISSMISGAKNLSILVISENQFSGSIPNEIGLLSNLTELSGNDNMFSGRIPGALVKLNLLSTLDLSKNKLSGELPMGIGALKRLNELNLASNRLSGNIPSEIGNLPVLNYLDLSSNHLSGSIPLELQNLKLNLLNLSNNLLSGVLPPLYAEDIYRDSFLGNPGLCNNDPSLCPHVGKGKNQGYWLLRSIFLLAIIVFVVGVIWFFFKYKEFKKSKKGIAISKWRSFHKLGFSEYEIADCLSEDKVIGSGASGKVYKVVLKNGEVVAVKKLWQGTRKEDTSLESEKDGFEAEVETLGKIRHKNIVRLWCCCNTGNCKLLVYEYMPNGSLGDLLHGSKKRFLDWPTRYKVVLDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNAGKGSESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPNDPEFGDKDLAKWVYATVDGRELDRVIDPKLGSEYKEEIYRVLDVGLLCTSSLPINRPSMRRVVKLLQEAAIETRPPAIVKKEVKLSPYLS* 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2331519 2336549 + CsaV3_7G003120.1 Csa07g00312 535875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00312 979 Gene3D Ribonuclease Inhibitor 179 279 IPR032675 -
Csa07g00312 979 Gene3D Ribonuclease Inhibitor 23 178 IPR032675 -
Csa07g00312 979 PRINTS Leucine-rich repeat signature 238 251 - -
Csa07g00312 979 PRINTS Leucine-rich repeat signature 546 559 - -
Csa07g00312 979 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Csa07g00312 979 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Csa07g00312 979 SMART serkin_6 681 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00312 979 Pfam Protein kinase domain 683 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00312 979 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 8 973 - -
Csa07g00312 979 ProSiteProfiles Protein kinase domain profile. 681 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00312 979 SUPERFAMILY L domain-like 357 607 - -
Csa07g00312 979 SUPERFAMILY RNI-like 68 369 - -
Csa07g00312 979 Gene3D Phosphorylase Kinase; domain 1 663 763 - -
Csa07g00312 979 ProSiteProfiles Leucine-rich repeat profile. 237 259 IPR001611 GO:0005515
Csa07g00312 979 SUPERFAMILY Protein kinase-like (PK-like) 675 955 IPR011009 -
Csa07g00312 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Csa07g00312 979 SMART LRR_typ_2 90 114 IPR003591 -
Csa07g00312 979 SMART LRR_typ_2 211 234 IPR003591 -
Csa07g00312 979 SMART LRR_typ_2 186 210 IPR003591 -
Csa07g00312 979 SMART LRR_typ_2 138 161 IPR003591 -
Csa07g00312 979 SMART LRR_typ_2 283 307 IPR003591 -
Csa07g00312 979 SMART LRR_typ_2 235 259 IPR003591 -
Csa07g00312 979 SMART LRR_typ_2 522 546 IPR003591 -
Csa07g00312 979 Gene3D Ribonuclease Inhibitor 280 616 IPR032675 -
Csa07g00312 979 Gene3D Transferase(Phosphotransferase) domain 1 764 970 - -
Csa07g00312 979 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 973 - -
Csa07g00312 979 Pfam Leucine rich repeat 213 272 IPR001611 GO:0005515
Csa07g00312 979 Pfam Leucine rich repeat 140 198 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00702 Csa-Chr3:6319874 Csa07g00312 Csa-Chr7:2331519 0 dispersed
Csa06g03068 Csa-Chr6:26350693 Csa07g00312 Csa-Chr7:2331519 0 dispersed
Csa06g03657 Csa-Chr6:29405707 Csa07g00312 Csa-Chr7:2331519 0 dispersed
Csa07g00312 Csa-Chr7:2331519 Csa07g00651 Csa-Chr7:4672994 0 dispersed
Csa07g00312 Csa-Chr7:2331519 Csa01g01260 Csa-Chr1:7844689 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78461 PF00069 Pkinase 1.80E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00312 - - csv:101208240 1862.43