Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00313 ATGTCTGAAGAGCAAACAATTTCAAGTGCTTTCATTTGCAGCATCCCATCACTTGGATCCATCAACAACAACAACAATCCTTCTGTTATTGTCAAGAAGAAGAGGAATCTCCCAGGAAATCCAGATCCTGAAGCAGAAGTAGTGTCGTTGTCACCAAAGACACTAATGGCAACGAACCGATTCTTGTGTGAGATATGTGGGAAGGGATTTCAAAGAGATCAAAACCTACAACTACATAGGAGAGGACACAATCTTCCATGGAAGCTAAAGCAAAGAAGCAATGGAAACAAAGAGCCAAGAAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTTCATCATCATCCTTCAAGGGCTCTTGGAGATCTCACAGGAATTAAAAAGCACTTTTGTAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAATGTTCTAAGAAATATGCTGTGCAATCAGATTGGAAAGCACACTCCAAAACATGTGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGATAGCTATGTCACTCACAGAGCATATTGTGTAGCATTGGCAGAAGAAACAGCAAGATTAAATGCAGCATCAACCAACATTGCCAACAACAACAATTCATTAGCTGATAATTACATCAACAACAACAATCCTCCTCAATTGTTCTTCCCTAATTATTCCTCCAACCTTTTCAAACCAAATGAAACTTCCCCCTTCTTTTTCAATAACAATAATACTCCCACAATACCACTCCCTTTTTGGATCCCAACGAATCCTCACCAAATCAATAATTTCCATTATCCAACAACAACAACTACAACAGCAACAGCAACAACAAATTCTGATGTTCTTTCTGTTCCTTCCTTATTCAGCAATGAAGAACAACAATCATCCCATCAATTTATGTCTTCATCACCCAACATGTCAGCTACTCTTTTGCTACAAAAAGCTGCACAAATTGGTGTTACAACAGATCACCCTTCATCATTGATGGAAAGTCTTGGTTTGAAATTCAGTTCAATAACTGATGGCAAAGCCTTGCTTTCAGGGATTTATGGGTCAATGATAAACTCAAATTCCAATAATGTTATTATTCCTCTTAGTGAAGAAAACCATCATCATCATCACTACTCTGCACCACCAGCAAAGAGAATGAGACATACTGTCAGTGAAGAGAGTGTTAATGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATGCACACCATATGTCATCCATCAACAGTAAATGGATGGATCTGA 1278 39.12 MSEEQTISSAFICSIPSLGSINNNNNPSVIVKKKRNLPGNPDPEAEVVSLSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNGNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASTNIANNNNSLADNYINNNNPPQLFFPNYSSNLFKPNETSPFFFNNNNTPTIPLPFWIPTNPHQINNFHYPTTTTTTATATTNSDVLSVPSLFSNEEQQSSHQFMSSSPNMSATLLLQKAAQIGVTTDHPSSLMESLGLKFSSITDGKALLSGIYGSMINSNSNNVIIPLSEENHHHHHYSAPPAKRMRHTVSEESVNGGEGETRDFLGVGMHTICHPSTVNGWI* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2338789 2342512 - CsaV3_7G003130.1 Csa07g00313 535876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00313 425 Gene3D Classic Zinc Finger 95 187 - -
Csa07g00313 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Csa07g00313 425 Pfam Zinc finger, C2H2 type 62 83 IPR013087 -
Csa07g00313 425 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 419 - -
Csa07g00313 425 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Csa07g00313 425 PANTHER ZINC FINGER PROTEIN MAGPIE 25 419 - -
Csa07g00313 425 Gene3D Classic Zinc Finger 57 84 - -
Csa07g00313 425 SUPERFAMILY beta-beta-alpha zinc fingers 60 159 IPR036236 -
Csa07g00313 425 SMART c2h2final6 61 83 IPR013087 -
Csa07g00313 425 SMART c2h2final6 139 159 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00313 Csa-Chr7:2338789 Csa06g03225 Csa-Chr6:27277593 5.85E-105 dispersed
Csa01g01399 Csa-Chr1:9587280 Csa07g00313 Csa-Chr7:2338789 5.94E-11 transposed
Csa01g02773 Csa-Chr1:24495683 Csa07g00313 Csa-Chr7:2338789 7.15E-106 transposed
Csa02g02630 Csa-Chr2:22847054 Csa07g00313 Csa-Chr7:2338789 6.76E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32252 PF00096 zf-C2H2 0.014 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00313 K25870 - csv:101207997 800.431