Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00329 ATGGCACAGTTACCACCTAAGATCCCCAATATGGCTTCTAATTGGTCTGAATTATCCCGTCAGAAAATCCCCTCCATGGAAACTTTTGCACCTACCACCACTACACCACCGGTTACTCAACAGAATCCTTCTTGGGTTGATGAATTTCTTGATTTCTCTTCCGTTAGACGTGGATCACATCGTCGGTCTGTTAGTGATTCCATCACATTTCTTGAAATGCCAATGCTGGAGGATGATTGTCGTGCCTCCGCTGCACCCCCACCACCGTCCACGGCAACCGGTGACCAGAATGAATTTGATAGATTTGATGACGAGCAATTCCTCTCGATGTTTAATGACGAAATCTCCGCTGCTGTTGCACCAACTTTGTCGTCGTCGAACCCTTCCACGCCGTCTGATCATAACAGTATTAACGATGAGAAAGATGCGCAAAACGATGGGAAGGTAAATCAGAATAAAAATGAGCCCGACGAAGTACAGAGCCAACAGCAATCGGAAAATCAAACTCAATCCAATTCAACGGCGACGGCGGGTTCCACTGATCGGATAACAGACCCAAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCACAAAGATCACGAGTGAGGAAGCTTCAATACATATCAGAACTTGAACGAAGCGTTACATCATTACAGGCTGAAGTATCGGTATTGTCGCCGCGAGTGGCGTTTTTGGACCATCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCTCAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCATTAAAAAGGGAGATAGAGAGATTAAGACAAGTATATCACCAACAAAACATCAAGAAAATGGAAAATGCATCACCATCACCAGCAATTACTCCATCTCAACCTGTCGCCACCACCGTCCCTGATGCCAAACTTCCAAACGTAGATCAAAACGAGCAAGTTCCAAATGTCATGGTTTAG 981 45.06 MAQLPPKIPNMASNWSELSRQKIPSMETFAPTTTTPPVTQQNPSWVDEFLDFSSVRRGSHRRSVSDSITFLEMPMLEDDCRASAAPPPPSTATGDQNEFDRFDDEQFLSMFNDEISAAVAPTLSSSNPSTPSDHNSINDEKDAQNDGKVNQNKNEPDEVQSQQQSENQTQSNSTATAGSTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMENASPSPAITPSQPVATTVPDAKLPNVDQNEQVPNVMV* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2441338 2445938 + CsaV3_7G003290.1 Csa07g00329 535892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00329 326 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 237 IPR004827 GO:0003700|GO:0006355
Csa07g00329 326 Coils Coil 266 286 - -
Csa07g00329 326 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 303 - -
Csa07g00329 326 MobiDBLite consensus disorder prediction 154 181 - -
Csa07g00329 326 MobiDBLite consensus disorder prediction 121 189 - -
Csa07g00329 326 Gene3D - 186 257 - -
Csa07g00329 326 MobiDBLite consensus disorder prediction 135 153 - -
Csa07g00329 326 MobiDBLite consensus disorder prediction 287 326 - -
Csa07g00329 326 MobiDBLite consensus disorder prediction 79 107 - -
Csa07g00329 326 SUPERFAMILY Leucine zipper domain 187 241 IPR046347 GO:0003700|GO:0006355
Csa07g00329 326 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 190 205 IPR004827 GO:0003700|GO:0006355
Csa07g00329 326 PANTHER BASIC LEUCINE ZIPPER 34 1 303 - -
Csa07g00329 326 SMART brlzneu 183 247 IPR004827 GO:0003700|GO:0006355
Csa07g00329 326 Pfam bZIP transcription factor 187 230 IPR004827 GO:0003700|GO:0006355
Csa07g00329 326 CDD bZIP_plant_RF2 188 238 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00329 Csa-Chr7:2441338 Csa05g00893 Csa-Chr5:6934222 7.91E-22 dispersed
Csa03g01927 Csa-Chr3:15075658 Csa07g00329 Csa-Chr7:2441338 9.00E-29 transposed
Csa04g02307 Csa-Chr4:23609265 Csa07g00329 Csa-Chr7:2441338 7.60E-105 transposed
Csa05g02176 Csa-Chr5:24730809 Csa07g00329 Csa-Chr7:2441338 7.74E-28 transposed
Csa02g02641 Csa-Chr2:22991331 Csa07g00329 Csa-Chr7:2441338 9.83E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32253 PF07716 bZIP_2 3.50E-09 CL0018 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00329 - - csv:101205276 600.897