Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g00330 | ATGGAAGGAGGTGGATCCAGTGGTAGCAGCTGTTCTTTCATGGCTACTTGTAACAGCACGACCAACAACAACAATTCTAATAACACTTCCATGATGATGATGATGATCAATAAAACTCATAATAATCCTCAAACATTTGACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTTCTACTTCCAACAACAACAACAATAATAATGTTCAAACTCAAACTCCTCTTTCTGCCTTTCTTCCTCAACCTCATACAAATAATAGTAACGATCATGTTGTTCCTCCTACTTCTACTTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTTACTGCTTATGTCAACTGTCAAAAGGTGGGTGCGCCGCCTGAAGTCGTAGCGAGGCTGGAGCAAGCATGCGCGGTGGCGACGGGAAGCTGTAGGGCGGCGGGGCATGGGAATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACTAAATATGAACAGGAGTTGACCAAACCTTTTAAAGAAGCAATGCTTTTTTTCTCAAGAATTGAGTCTCAGCTGAAAGCCGAAGCAGTTTCTTCTGATGGTTTCGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGAGATTGAGGTTGATATGAATGAAAATTACATCGACCCTCAAGCTGAAGTGAAGGAACTCAAAGGCCAGCTTCTACGCAAATACAGTGGATATCTTGGCAGCCTAAAACAAGAGTTTTTGAAGAAGAAGAAAAACGGAAAGTTACCCAAAGAAGCTCGACAACAATTGCTCGACTGGTGGAGCCGACACTACAAATGGCCATATCCCTCGGAATCGCAAAAGGTGGCGTTGGCAGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGGAAGAGGCATTGGAAGCCAACAGAAGATATGCAATTTGTGGTGATGGATGCTGGTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCCTCTCATTCTGACTCACATATGTAA | 1053 | 43.21 | MEGGGSSGSSCSFMATCNSTTNNNNSNNTSMMMMMINKTHNNPQTFDNKMFLPLSWSSSTSNNNNNNNVQTQTPLSAFLPQPHTNNSNDHVVPPTSTSKAKIMAHPLFPRLLTAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGHGNDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKAEAVSSDGFELVGQNECSKEIEVDMNENYIDPQAEVKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPTEDMQFVVMDAGHPHYYLDNVICNPFSMDCSSSHSDSHM* | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2465899 | 2471201 | + | CsaV3_7G003300.1 | Csa07g00330 | 535893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g00330 | 350 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 3 | 337 | - | - | |
Csa07g00330 | 350 | ProSiteProfiles | ELK domain profile. | 228 | 248 | IPR005539 | GO:0003677 | |
Csa07g00330 | 350 | SUPERFAMILY | Homeodomain-like | 250 | 324 | IPR009057 | - | |
Csa07g00330 | 350 | SMART | KNOX1_2 | 96 | 140 | IPR005540 | GO:0003677|GO:0005634 | |
Csa07g00330 | 350 | SMART | ELK_2 | 228 | 249 | IPR005539 | GO:0003677 | |
Csa07g00330 | 350 | PANTHER | HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 | 3 | 337 | - | - | |
Csa07g00330 | 350 | Pfam | Homeobox KN domain | 268 | 307 | IPR008422 | GO:0003677|GO:0006355 | |
Csa07g00330 | 350 | ProSiteProfiles | 'Homeobox' domain profile. | 248 | 311 | IPR001356 | GO:0003677 | |
Csa07g00330 | 350 | Pfam | ELK domain | 228 | 249 | IPR005539 | GO:0003677 | |
Csa07g00330 | 350 | SMART | HOX_1 | 250 | 315 | IPR001356 | GO:0003677 | |
Csa07g00330 | 350 | SMART | KNOX2_2 | 143 | 194 | IPR005541 | GO:0003677|GO:0005634 | |
Csa07g00330 | 350 | ProSitePatterns | 'Homeobox' domain signature. | 286 | 309 | IPR017970 | GO:0000981|GO:0006355 | |
Csa07g00330 | 350 | CDD | homeodomain | 260 | 311 | IPR001356 | GO:0003677 | |
Csa07g00330 | 350 | Pfam | KNOX1 domain | 99 | 136 | IPR005540 | GO:0003677|GO:0005634 | |
Csa07g00330 | 350 | Gene3D | - | 253 | 315 | - | - | |
Csa07g00330 | 350 | Pfam | KNOX2 domain | 147 | 190 | IPR005541 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g02662 | Csa-Chr4:25925517 | Csa07g00330 | Csa-Chr7:2465899 | 8.39E-31 | dispersed | |
Csa05g00334 | Csa-Chr5:2116274 | Csa07g00330 | Csa-Chr7:2465899 | 5.10E-27 | dispersed | |
Csa06g03487 | Csa-Chr6:28557436 | Csa07g00330 | Csa-Chr7:2465899 | 3.11E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32254 | PF03791 | KNOX2 | 2.50E-21 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g00330 | - | - | csv:101205039 | 626.706 |