Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00330 ATGGAAGGAGGTGGATCCAGTGGTAGCAGCTGTTCTTTCATGGCTACTTGTAACAGCACGACCAACAACAACAATTCTAATAACACTTCCATGATGATGATGATGATCAATAAAACTCATAATAATCCTCAAACATTTGACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTTCTACTTCCAACAACAACAACAATAATAATGTTCAAACTCAAACTCCTCTTTCTGCCTTTCTTCCTCAACCTCATACAAATAATAGTAACGATCATGTTGTTCCTCCTACTTCTACTTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTTACTGCTTATGTCAACTGTCAAAAGGTGGGTGCGCCGCCTGAAGTCGTAGCGAGGCTGGAGCAAGCATGCGCGGTGGCGACGGGAAGCTGTAGGGCGGCGGGGCATGGGAATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACTAAATATGAACAGGAGTTGACCAAACCTTTTAAAGAAGCAATGCTTTTTTTCTCAAGAATTGAGTCTCAGCTGAAAGCCGAAGCAGTTTCTTCTGATGGTTTCGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGAGATTGAGGTTGATATGAATGAAAATTACATCGACCCTCAAGCTGAAGTGAAGGAACTCAAAGGCCAGCTTCTACGCAAATACAGTGGATATCTTGGCAGCCTAAAACAAGAGTTTTTGAAGAAGAAGAAAAACGGAAAGTTACCCAAAGAAGCTCGACAACAATTGCTCGACTGGTGGAGCCGACACTACAAATGGCCATATCCCTCGGAATCGCAAAAGGTGGCGTTGGCAGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGGAAGAGGCATTGGAAGCCAACAGAAGATATGCAATTTGTGGTGATGGATGCTGGTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCCTCTCATTCTGACTCACATATGTAA 1053 43.21 MEGGGSSGSSCSFMATCNSTTNNNNSNNTSMMMMMINKTHNNPQTFDNKMFLPLSWSSSTSNNNNNNNVQTQTPLSAFLPQPHTNNSNDHVVPPTSTSKAKIMAHPLFPRLLTAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGHGNDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKAEAVSSDGFELVGQNECSKEIEVDMNENYIDPQAEVKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPTEDMQFVVMDAGHPHYYLDNVICNPFSMDCSSSHSDSHM* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2465899 2471201 + CsaV3_7G003300.1 Csa07g00330 535893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00330 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 337 - -
Csa07g00330 350 ProSiteProfiles ELK domain profile. 228 248 IPR005539 GO:0003677
Csa07g00330 350 SUPERFAMILY Homeodomain-like 250 324 IPR009057 -
Csa07g00330 350 SMART KNOX1_2 96 140 IPR005540 GO:0003677|GO:0005634
Csa07g00330 350 SMART ELK_2 228 249 IPR005539 GO:0003677
Csa07g00330 350 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 3 337 - -
Csa07g00330 350 Pfam Homeobox KN domain 268 307 IPR008422 GO:0003677|GO:0006355
Csa07g00330 350 ProSiteProfiles 'Homeobox' domain profile. 248 311 IPR001356 GO:0003677
Csa07g00330 350 Pfam ELK domain 228 249 IPR005539 GO:0003677
Csa07g00330 350 SMART HOX_1 250 315 IPR001356 GO:0003677
Csa07g00330 350 SMART KNOX2_2 143 194 IPR005541 GO:0003677|GO:0005634
Csa07g00330 350 ProSitePatterns 'Homeobox' domain signature. 286 309 IPR017970 GO:0000981|GO:0006355
Csa07g00330 350 CDD homeodomain 260 311 IPR001356 GO:0003677
Csa07g00330 350 Pfam KNOX1 domain 99 136 IPR005540 GO:0003677|GO:0005634
Csa07g00330 350 Gene3D - 253 315 - -
Csa07g00330 350 Pfam KNOX2 domain 147 190 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02662 Csa-Chr4:25925517 Csa07g00330 Csa-Chr7:2465899 8.39E-31 dispersed
Csa05g00334 Csa-Chr5:2116274 Csa07g00330 Csa-Chr7:2465899 5.10E-27 dispersed
Csa06g03487 Csa-Chr6:28557436 Csa07g00330 Csa-Chr7:2465899 3.11E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32254 PF03791 KNOX2 2.50E-21 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00330 - - csv:101205039 626.706