Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00338 ATGAACCCTCGATTTGGGTTTTTGTTCCTGGTTTTGATCACTGTTTTGCTGGGAGCTGATTCAAAATGCCCCAGAACTTGCGATGTAGCTTTAGGTTCCTACTTCGTGTGGGAGGGTGCCAATTTGTCTTTCGTCTCTCAAATGTTTCTGTTGTCATCTCCTGATATGATCGTTAGCTACAACAGACAAAGTGTTCCCAACAAAGATAGTGTTAATAGTGGCATCAGAGTCAACGTTCCATTCTCTTGCGACTGTATTGACGATACGTTTCTGGGTCATACGTTTCAGTACCAGATTAAACGTGGAGATACTTACAATGAAATTGCAACCAAATTCTATTCGGGGCTGACTACGGTGGGCATGCTACAGAGATTCAATAACTTTAATGCTCTTAATCTTCAAGAAAATCAGATTTTGAATGTGGTAGTGAACTGCTCCTGTGGAGATCCTGATATTTCGAGGACATATGGGCTGTTTGTCACTTACCCAATTCGATCCAATGATAGTTGGGATAAGTTGCGAGAAGATACGAATGTCAGCCTATCTTTGCTGCAACGATACAATCAGGGTGTGAATTTCAGTCCAGGAAATTTGGTCTTTATTCCAGGAAGAGATCAAAGTGGCAACTATCCACCTCTGAATATAAGCACAGGACTTGCAGGTGGAGCCATTGCAGGCATAATTATCGGTGCAGTACTTGGGTTTCTCCTTGTAGCAGGTGCCATTTTCATTGTAATTCGAAAGAGGAAGTTGAAAAGTTCTAGATTGTTGGTGTTCTCTCAAGAACTCTCTTCGCAAGATGGGCGTGCTCTTGCCCGTGGAAGTTTGTTAGATAAATCTTCTGAATCAAATGGTCAAGGTGATGGTGGTATAGCTGCTGTTACTGGTATTACAGTTGACAAATCAGTGGAATTCTCATATGAAGAACTTGCCAAAGCCACGGACGACTTTAGCTTGGCTAACAAAATCGGTGAAGGTGGATTTGGATCAGTTTACTATGCAGAACTCAGAGGAGAGAAAGCTGCAATAAAGAAGATGGATATGCAAGCTACAAGGGAGTTCCTTGCGGAAATTAAGGTTCTAACACGTGTTCACCACTTGAACTTGGTGCGCTTGATAGGATATTGTGTTGAGAATTCTCTTTTCCTAGTTTATGAGTACATTGAGAATGGCAACTTAAGCCAACACTTACGAGGCACAGGTCGAGATCCGTTGCCGTGGCCTTCTAGGGTCCAAATAGCCCTAGATTCAGCTAGAGGCCTCGAGTATATCCATGAGCACACTGTTCCTGTTTATATTCATCGTGATATTAAATCCGCCAACATATTGATTGACAAAAACTTTCATGGAAAGGTTGCAGACTTTGGGTTAACCAAACTTACTGAAGTTGGAAATTCATCGCTTCCTACACGTCTTGTGGGCACATTTGGATATATGCCACCTGAATATGCGCAATATGGAGATGTTTCTCCAAAGATCGACGTGTATGCTTTCGGTGTTGTTCTTTATGAGCTTATTTCAGCCAAGGAAGCTGTGGTCAAGACGAACAGAATGAGCGCAATCAATGAATCAAAAGGCCTTGTTGCTTTGTTTGAAGACGTCCTGAATCAACCCGACGCAAAAGAGAACCTTTATAAACTAGTCGACCCAAGACTTGAAGAGAACTACCCTCTCGATTCAGTTTTCAAGATGGCTCAGCTTGCTAAGGCTTGTACACATGAGAATCCACAGCTACGGCCAAGCATGAGATCAATTGTGGTTGCTCTCATGACTCTTTCTTCTGCAACAGAGGATTGGGATGTTGGCTCTTTCTACGAAAACCAAGCTCTTGTCAACTTGATGTCAGGAAGATAG 1854 42.5 MNPRFGFLFLVLITVLLGADSKCPRTCDVALGSYFVWEGANLSFVSQMFLLSSPDMIVSYNRQSVPNKDSVNSGIRVNVPFSCDCIDDTFLGHTFQYQIKRGDTYNEIATKFYSGLTTVGMLQRFNNFNALNLQENQILNVVVNCSCGDPDISRTYGLFVTYPIRSNDSWDKLREDTNVSLSLLQRYNQGVNFSPGNLVFIPGRDQSGNYPPLNISTGLAGGAIAGIIIGAVLGFLLVAGAIFIVIRKRKLKSSRLLVFSQELSSQDGRALARGSLLDKSSESNGQGDGGIAAVTGITVDKSVEFSYEELAKATDDFSLANKIGEGGFGSVYYAELRGEKAAIKKMDMQATREFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEYIENGNLSQHLRGTGRDPLPWPSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNRMSAINESKGLVALFEDVLNQPDAKENLYKLVDPRLEENYPLDSVFKMAQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGR* 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2518563 2522723 + CsaV3_7G003380.1 Csa07g00338 535901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00338 617 Gene3D Phosphorylase Kinase; domain 1 302 387 - -
Csa07g00338 617 Gene3D Transferase(Phosphotransferase) domain 1 388 608 - -
Csa07g00338 617 SUPERFAMILY Protein kinase-like (PK-like) 300 589 IPR011009 -
Csa07g00338 617 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1 6 617 - -
Csa07g00338 617 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Csa07g00338 617 Pfam LysM domain 97 141 IPR018392 -
Csa07g00338 617 ProSiteProfiles Protein kinase domain profile. 317 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00338 617 SMART serkin_6 317 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00338 617 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 6 617 IPR044812 GO:0019199|GO:0045087
Csa07g00338 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Csa07g00338 617 Pfam Protein tyrosine and serine/threonine kinase 319 588 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g01109 Csa07g00338 CCT
Csa06g01109 Csa07g00338 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02358 Csa-Chr3:21317706 Csa07g00338 Csa-Chr7:2518563 7.23E-93 dispersed
Csa05g02306 Csa-Chr5:25562986 Csa07g00338 Csa-Chr7:2518563 9.03E-67 dispersed
Csa06g02868 Csa-Chr6:24978876 Csa07g00338 Csa-Chr7:2518563 4.50E-49 dispersed
Csa06g02872 Csa-Chr6:24993032 Csa07g00338 Csa-Chr7:2518563 9.14E-70 dispersed
Csa07g00338 Csa-Chr7:2518563 Csa02g00125 Csa-Chr2:866565 1.93E-74 dispersed
Csa07g00338 Csa-Chr7:2518563 Csa05g02558 Csa-Chr5:26969429 1.84E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78462 PF07714 PK_Tyr_Ser-Thr 4.40E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00338 - K13429 csv:101203576 1209.51