Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00347 ATGGATTCCCCTTCTCCTCCTCCCCTCCAGTTTCCGGTTAACCTCAATTCCACCCTCCCCCATCCCCGCAATTCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCCCCCTCCTCCCCCTCCTCCTCCTCCGCCTGCTGCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCCTCCGATGATAAATCCCGAGTCCTCTCTGCTTCTCACTCCAATCTTACTCCCACCAAACTCCCCTTCAATGTTAATACCGGGTTGAATCTCTTGACGACCAACTCCTGTAGCGATCAATCCATGGTGGATGATGGGGTTTCACCAAACCCAGAAGAAAAAAGAGTAAAAAACGAGAGAGCAGTCCTTCAAGCTGAATTGGAGAGGATTAATTCAGAGAATCTAAGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACTCTACAGATGCAATTCAATACACTAATACAAACCCAGAAAACAGAAGACGTCGGTGACCCGATTGAGGAAAACCCCGACGGCAGTGGTGGCGGAGGGAATAACAATAACAACAACAACACAAATATTAGCAATAAACTGGTGCCGAGACAATTTATGGATCTTGGATTAGCTACCAATACGGAGAATGATGAGGCATCGATGTCATCGTCAGAAGGAAGAAGTGGGGAGCGCTCCCGGTCGCCGGGAAACACGGGAGAAGTAGCATCGTCGAAACGGCAAAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAATAACAATAATAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGAAGTGGATCAAACTGAAGCTACTATGAGAAAGGCTAGAGTCTCTGTTCGAGCCAGATCAGAAGCACCCATGATAACAGATGGATGCCAATGGAGAAAATATGGACAAAAAATGGCAAAGGGAAACCCTTGTCCACGAGCTTACTATCGTTGCACGATGGCTCTCGGCTGCCCCGTTAGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATATTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCGGCTGCCATGGCCATGGCTTCCACCACATCATCGGCGGCAAGAATGCTTCTATCAGGATCCATGTCAAGTGCTGATGGTTTAATGAACTCCAATTTTTTAGCAAGAACCTTATTACCATGTTCTTCAAGCATGGCTACAATCTCAGCCTCAGCTCCATTTCCCACCGTCACATTAGACCTAACTCAAACTCCTAATCCCTTATTCCAACGCCCCGCTACAGGTCACTTCCCCATCCCGTTCGCAGCCGCCGCTCCCCCTCAAACCTTCCCACAGATCTTTGGACATGCATTATACAATCAATCAAAATTCTCGGGCCTCCAAATGTCCAAGGATATGGAAGCACCACAGCCTCCTCCACCTCCGCAAAATCCATTCACCGACACGTTGAGTGCGGCGGGTGCAGCCATCGCGTCTGACCCCAACTTCATTGCGGCGTTGGCAACAGCAATGACGTCGCTGATCGGGGGATCGCATCATCAGAAGGAGAATGGTAATGGCAATAGTAATGTTGATAATAAAACAAGTAGCAACTCTCAACAGTAA 1608 47.76 MDSPSPPPLQFPVNLNSTLPHPRNSPPPPPPPPPPPPPPPPPPPAAHRPFFDEMNFFPSDDKSRVLSASHSNLTPTKLPFNVNTGLNLLTTNSCSDQSMVDDGVSPNPEEKRVKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTEDVGDPIEENPDGSGGGGNNNNNNNTNISNKLVPRQFMDLGLATNTENDEASMSSSEGRSGERSRSPGNTGEVASSKRQSPDQSSNWGSNNNNNNNKVPKFSSSSGKEVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMALGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPATGHFPIPFAAAAPPQTFPQIFGHALYNQSKFSGLQMSKDMEAPQPPPPPQNPFTDTLSAAGAAIASDPNFIAALATAMTSLIGGSHHQKENGNGNSNVDNKTSSNSQQ* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2571163 2574863 + CsaV3_7G003470.1 Csa07g00347 535910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00347 535 SUPERFAMILY Formin homology 2 domain (FH2 domain) 34 44 - -
Csa07g00347 535 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 43 532 IPR044810 GO:0003700
Csa07g00347 535 MobiDBLite consensus disorder prediction 511 535 - -
Csa07g00347 535 SMART WRKY_cls 293 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00347 535 MobiDBLite consensus disorder prediction 164 190 - -
Csa07g00347 535 MobiDBLite consensus disorder prediction 1 48 - -
Csa07g00347 535 MobiDBLite consensus disorder prediction 21 48 - -
Csa07g00347 535 MobiDBLite consensus disorder prediction 206 271 - -
Csa07g00347 535 Coils Coil 110 144 - -
Csa07g00347 535 ProSiteProfiles WRKY domain profile. 288 354 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00347 535 Pfam WRKY DNA -binding domain 295 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00347 535 Gene3D WRKY domain 278 355 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa07g00347 535 PANTHER OS05G0567200 PROTEIN 43 532 - -
Csa07g00347 535 SUPERFAMILY WRKY DNA-binding domain 286 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa07g00347 535 MobiDBLite consensus disorder prediction 175 190 - -
Csa07g00347 535 MobiDBLite consensus disorder prediction 206 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00218 Csa-Chr1:1407016 Csa07g00347 Csa-Chr7:2571163 2.05E-49 dispersed
Csa01g00787 Csa-Chr1:4979523 Csa07g00347 Csa-Chr7:2571163 4.35E-56 dispersed
Csa04g02635 Csa-Chr4:25729944 Csa07g00347 Csa-Chr7:2571163 1.21E-21 dispersed
Csa07g00347 Csa-Chr7:2571163 Csa01g00472 Csa-Chr1:2993098 3.70E-13 dispersed
Csa03g01879 Csa-Chr3:14489815 Csa07g00347 Csa-Chr7:2571163 8.13E-52 transposed
Csa06g03497 Csa-Chr6:28610615 Csa07g00347 Csa-Chr7:2571163 6.21E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32257 PF03106 WRKY 3.20E-24 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00347 - - csv:101205587 927.546