Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00349 ATGGCCTGGACCCGACGATCCCCCGTCGGCAACGGCTCCTCCGCCACCGTCTACCTCGCCTCCACTGCCTCCTCCGGCCAACTATTTGCTGTCAAGTCCGCTGAGCTTCTCAAATCAGACTTCTTGAAAATAGAGCGAAGGGTTCTTTCTTCCCTATCCAACCCTTCAATTGTGGGCTACAAGGGATTCGATGTAACTAGAGAAAATGGGAAGCTAATGTACAATCTCTTCATGGAGTACGCTGCCGGTGGTACTCTCGCTGATGAGATATTCCGGCGTGGTGGCCGGATTAAGGAGGCAACGGCGGCGTTTTACACTCGTGAAATTGTTAGAGGATTGGAGTACTTGCACAAACAGGGGTTGGTGCATTGTGATATCAAAGCTAAGAACATTTTAATCGCTGGAGATGGTTTGAAGATTGCTGATTTCGGATGCTCCAGATGGGTTTGTGAGTCCGAGGCAGTAATAGGCGGAACGCCGATGTTCATGGCACCGGAGGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGACATATGGGCACTTGGGTGTACATTAATCGAAATGGTCACCGGCGCTCCACCATGGAAAATTACCGACGACCCAGTTTCGGTGTTGTACCGGATCGGATATTCTGGCGAGTCTCCGGAGATTCCGAGCTTTCTGTCGGAGAAAGGAAAGGATTTTTTAAGGAAATGCTTGAGAAGGGAAGCAACAGAAAGATGGAGTGCGAGTCAACTTCTTGAGCATCCATTTTTGGGGGAATTGAGTTCTGGGTTGGAGGAAATCAAGGAATTACATTTATATTCTGAATCTCCGACGAGTATTTTAGATCAAAGCCTCTGGAATTCCTTAGAAGAAGAATCAGAAACTTTGTTGAGAACAGAGCAATGGGACGATGACAGAATCGAACGGCTGGCTACGTTTTCAGGAGAAATTAAGTGGGAATTGGGAGACGAGAATTGGATCACAATCAGAAGCTATGTAGATGGTGAAGACGAAGACGAATTAAATTTTAGTAGAAATGATTTAGACTTAGTGGAAGAGGGAAGAATAGTTAGTGAGGAAATCCAGTATTTGGAATTGTTAGATAAAACAGTTAGCTTTAGAGTAAGGTAG 1119 46.29 MAWTRRSPVGNGSSATVYLASTASSGQLFAVKSAELLKSDFLKIERRVLSSLSNPSIVGYKGFDVTRENGKLMYNLFMEYAAGGTLADEIFRRGGRIKEATAAFYTREIVRGLEYLHKQGLVHCDIKAKNILIAGDGLKIADFGCSRWVCESEAVIGGTPMFMAPEVARGEKQGISSDIWALGCTLIEMVTGAPPWKITDDPVSVLYRIGYSGESPEIPSFLSEKGKDFLRKCLRREATERWSASQLLEHPFLGELSSGLEEIKELHLYSESPTSILDQSLWNSLEEESETLLRTEQWDDDRIERLATFSGEIKWELGDENWITIRSYVDGEDEDELNFSRNDLDLVEEGRIVSEEIQYLELLDKTVSFRVR* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2582930 2585289 + CsaV3_7G003490.1 Csa07g00349 535912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00349 372 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00349 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Csa07g00349 372 CDD STKc_MAPKKK 3 253 - -
Csa07g00349 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 336 - -
Csa07g00349 372 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Csa07g00349 372 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Csa07g00349 372 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00349 372 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00349 372 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 336 - -
Csa07g00349 372 SUPERFAMILY Protein kinase-like (PK-like) 5 294 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02527 Csa-Chr1:22285116 Csa07g00349 Csa-Chr7:2582930 1.63E-63 dispersed
Csa06g02946 Csa-Chr6:25516201 Csa07g00349 Csa-Chr7:2582930 1.86E-74 dispersed
Csa07g00349 Csa-Chr7:2582930 Csa06g02446 Csa-Chr6:21834105 1.68E-54 dispersed
Csa07g01912 Csa-Chr7:18978537 Csa07g00349 Csa-Chr7:2582930 4.16E-44 dispersed
Csa07g01108 Csa-Chr7:10703813 Csa07g00349 Csa-Chr7:2582930 6.69E-105 transposed
Csa02g02662 Csa-Chr2:23201960 Csa07g00349 Csa-Chr7:2582930 5.82E-125 wgd
Csa06g03499 Csa-Chr6:28626745 Csa07g00349 Csa-Chr7:2582930 4.67E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78463 PF00069 Pkinase 2.80E-54 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00349 K20716 - csv:101205351 729.939