Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00367 ATGCCACAAAGCTTAAATTTTTCATGGAAAACTCTAATTGCAGTGGCTTCTTGGGCTCCGTTCAAGGTACTTGAGAAAGAGATTGTAGCCATGATTGGCCCACAATCCTCAGTAGTGGCTCATGTGATTTCTCAGATTGTTAATGGTCTACAAATTCCTCTAGTATCTTATGCTGCCACTGATCCAACATTATCCACTTTACAACTCCCTTTTTTTCTCAGAACCACTATAAGCGACTCTTACCAAATGGCTGCCATGGCTGACTTGATTGATTACTATGGCTGGAAAGAAGTCATTGTTATATTTTTGGATGATGATTATGGTAGAAATGGGATATCTTTTCTGGGTGATGAACTTCAGAAGAAAATGTGCCGTATTTCCCATGCATTCCCTTTACCTTCTCTGGATAATCTTTCTAAGATCACACAAATACTCAACAATTCTAAATTACTTGGTCCTCGAGTTTATGTAGTTCATGTAGGCCCTGATCCCCAATTAAGAATCTTCACTATTGCCCATAAACTCGGTATGCTTTCAAGCAATTATGTTTGGTTCGCAACTGATTGGCTTTCCACAACTCTTGATTCTTCTTCACCAATAACCAATGGTGCTTCACTTGATATGCTTAATGGAGTTGTTGGGTTGCGCCCTCATACTCCAGAGTCTAAAGGAAAGAGAGATTTGTGGGATCGGTTAAGGAAAATGCAGCCAAAAGGTTTAACTAATTCTGCGTTGAATGTTTATGGACTTTATGCTTATGATTCAGTATGGGTTGTTGCAAAGGCAGTGGATAAGTTTCTTAAAGAAAATGGGAATATCATTACATTTTCACCCACAGGTAAAGTGTTGGGCTCTAATGAAAGTGGAATTCAATTGGGTAATGTTAAAGTGTTTGATAGAGGGAGTGATTTACTTAAAATTCTTATGCAAACTGATTACAATGGTTTAAGTGGGAGAATTCAGTTTGGTGAAGACAGAAGTGTTGTTAATGGTAGCTATGATGTGATTAATATTAACCAAAGGAAAATGAATTTGGTGGGTCATTGGTCTAATGACTTAAGATTTCATCCTAACTTAGATCAGAAACTTGAGAAAGTGGTTTGGCCTGGTGGGAAGGAGGAGATACCAAGGGGATGGGTGATAGCAGATAGTGGAAAACCTTTGAGAATTGCTTTCCCAAGAAGAGCAAGCTTTGTTGATTTTGTAACTCAATTGAACAACACCAATATTGTTCGAGGATATGTTATTGATATTTTCAAAGAAGCTCTCAAGTTTGTTCCATATGAAGTTCCTTACAAGTTTGTGCCTTTTGGAGATGGTAAAGTTAATCCCAGTTATGATGAACTTGTTCAATCGGTTGCAAATAATGTGTTTGATGCAGCAGTTGGGGACATTGCAATCGTTACGAACCGAACCAAAGTTGTTGATTTTTCTCAACCATATACCACAACAGGGCTGATCATAGTTGCACCAGTTGAAGATTCAAAATCAAGTGCTTGGGTGTTCCTTAAACCATTTACAGTAGAGATGTGGTGTGCAACTGCAGGTTCCTTTGTGGTAATTGGTATTGTTATTTGGATGTTAGAGCATAGAATCAACGACCATTTTCGAGGTCCTCCGAAAAGACAGATTATCACAATGTGTTTGTTTAGCATTTCAACTCTTTTCAAGGCAAATCAAGAAGCAACAATAAGTCCACTCTCACGACTAGTGATGTTGGTTTGGCTGTTCTTATTATTGGTAATAACCTCAAGCTACACAGCAAGTTTGACATCAATCCTTACACTCCAACAACTTTGGTCTCCAATACGAGGAATTGATGACTTGGTTGCAAGTAATTTGCCAATTGGATATCAAGTAGGATCCTTTGCTTACGACTATCTCACACAAAGCCTTTTCATTCCAAGTTCAAGACTGCAGAGGCTGAACTCCTCTGAAGACTACGAGAAAGCACTGCGTCTTGGCCCAAAAGGAGGCGGCGTGGCGGCCATCATCGATGAACTTCCATACTTGGAGTTGTTTCTGTCAAAGACTAAAGAATTTGGAATCATTGGTCAACCTTTTACTAGGAGCGGATGGGGATTTGCTTTTCAACGAGGATCTCGACTTGCAGTCGATATGTCAACTGCAATTCTGAAGCTCTCGGAGAGCGGAAAGCTGCAAGAAATACACGACTCATGGTTCTGCAAGCTAGGTTGTCCAGGTAATCGGGGAGGAAAGTCAGAGCCAGACCAACTTCACTTGATCAGTTTCTGGGGTTTGTATTTGCTTTGTGGAATCATTTCCGTCGCTGCACTCTTCCTGTTTCTTTTAAGACTAATCCGCCAGTATATCCGTTACATACGACATCATCGACGACGTCATTCAGAAGAAGTTACACCATTCCCAGTTCCATCCAACACTAGCTGTACTCAGAGGATTCAAAACTTTATAAACTTTATTGATGAGAAAGAAGAAGCTATCAAAAGCTTCTTTGGAGCATCACATGGTGCTCAAAATGGGAACCAACTTCACAATCATTCCCAAAAAGCCAAGGAGAAGGCTGATTCAGAGATACAGATAGGGCCCACGACCATGGGTATGAATCGAGGATAG 2595 40.08 MPQSLNFSWKTLIAVASWAPFKVLEKEIVAMIGPQSSVVAHVISQIVNGLQIPLVSYAATDPTLSTLQLPFFLRTTISDSYQMAAMADLIDYYGWKEVIVIFLDDDYGRNGISFLGDELQKKMCRISHAFPLPSLDNLSKITQILNNSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLSSNYVWFATDWLSTTLDSSSPITNGASLDMLNGVVGLRPHTPESKGKRDLWDRLRKMQPKGLTNSALNVYGLYAYDSVWVVAKAVDKFLKENGNIITFSPTGKVLGSNESGIQLGNVKVFDRGSDLLKILMQTDYNGLSGRIQFGEDRSVVNGSYDVININQRKMNLVGHWSNDLRFHPNLDQKLEKVVWPGGKEEIPRGWVIADSGKPLRIAFPRRASFVDFVTQLNNTNIVRGYVIDIFKEALKFVPYEVPYKFVPFGDGKVNPSYDELVQSVANNVFDAAVGDIAIVTNRTKVVDFSQPYTTTGLIIVAPVEDSKSSAWVFLKPFTVEMWCATAGSFVVIGIVIWMLEHRINDHFRGPPKRQIITMCLFSISTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTLQQLWSPIRGIDDLVASNLPIGYQVGSFAYDYLTQSLFIPSSRLQRLNSSEDYEKALRLGPKGGGVAAIIDELPYLELFLSKTKEFGIIGQPFTRSGWGFAFQRGSRLAVDMSTAILKLSESGKLQEIHDSWFCKLGCPGNRGGKSEPDQLHLISFWGLYLLCGIISVAALFLFLLRLIRQYIRYIRHHRRRHSEEVTPFPVPSNTSCTQRIQNFINFIDEKEEAIKSFFGASHGAQNGNQLHNHSQKAKEKADSEIQIGPTTMGMNRG* 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2736621 2742426 + CsaV3_7G003670.1 Csa07g00367 535930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00367 864 Gene3D - 78 351 - -
Csa07g00367 864 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 833 - -
Csa07g00367 864 Gene3D - 21 330 - -
Csa07g00367 864 Gene3D - 499 631 - -
Csa07g00367 864 PANTHER GLUTAMATE RECEPTOR 3.7 16 833 - -
Csa07g00367 864 Pfam Ligand-gated ion channel 729 760 IPR001320 GO:0015276|GO:0016020
Csa07g00367 864 Gene3D - 677 735 - -
Csa07g00367 864 Pfam Receptor family ligand binding region 25 339 IPR001828 -
Csa07g00367 864 SMART GluR_14 389 730 IPR001320 GO:0015276|GO:0016020
Csa07g00367 864 MobiDBLite consensus disorder prediction 835 864 - -
Csa07g00367 864 SUPERFAMILY Periplasmic binding protein-like I 23 380 IPR028082 -
Csa07g00367 864 PIRSF IGluLR_plant 5 858 IPR017103 -
Csa07g00367 864 Pfam Bacterial extracellular solute-binding proteins, family 3 407 728 IPR001638 -
Csa07g00367 864 Coils Coil 861 864 - -
Csa07g00367 864 Gene3D - 381 498 - -
Csa07g00367 864 PRINTS Metabotropic glutamate GPCR signature 31 57 IPR000337 GO:0004930|GO:0007186|GO:0016021
Csa07g00367 864 PRINTS Metabotropic glutamate GPCR signature 63 82 IPR000337 GO:0004930|GO:0007186|GO:0016021
Csa07g00367 864 PRINTS Metabotropic glutamate GPCR signature 82 98 IPR000337 GO:0004930|GO:0007186|GO:0016021
Csa07g00367 864 PRINTS Metabotropic glutamate GPCR signature 98 115 IPR000337 GO:0004930|GO:0007186|GO:0016021
Csa07g00367 864 CDD GluR_Plant 386 728 - -
Csa07g00367 864 SUPERFAMILY Periplasmic binding protein-like II 374 728 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02721 Csa-Chr4:26244040 Csa07g00367 Csa-Chr7:2736621 0 dispersed
Csa06g03402 Csa-Chr6:28181168 Csa07g00367 Csa-Chr7:2736621 0 dispersed
Csa07g00194 Csa-Chr7:1584463 Csa07g00367 Csa-Chr7:2736621 4.87E-151 dispersed
Csa07g00367 Csa-Chr7:2736621 Csa06g01991 Csa-Chr6:17912287 5.03E-149 dispersed
Csa02g02681 Csa-Chr2:23361035 Csa07g00367 Csa-Chr7:2736621 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00367 K05387 - csv:101203158 1632.08