Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00370 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACAGCGTCGTCCATGATCGGAAGAAATGGAAATGTTGGAATTTTTGGGTCCCCAGCCAGCCTTGTTCTTGGTCAGGAGCTGCAGGGAATAGAAATGGGAGAAAATGAATATGGAAGAATGAGAGAAACAGAAGAGTTTGAAAGTGGAACAAAATCAAGTAGTGAGAATCATGAGGTTGGTTCCGGTGATGACCAACTCAATAACCAACGCCCCAACAAGAAAAAGCGTTACCACCGCCACACTCAGCATCAGATCCAACAAATGGAAGCGTTTTTCAAGGAATGCCCTCACCCAGATGACAAGCAAAGGAAGGAGCTAAGTAGGGAGTTGAATTTAGAGCCATTGCAAGTCAAGTTCTGGTTCCAAAACAAGAGAACTCAGATGAAGACACATCATGAGCGACATGAAAACACACAGCTCCGAACAGAAAATGAGAAGCTAAGAGCAGATAATATGAGATATAGAGAAGCTCTAAGCAATGCCACGTGTCCCAATTGTGGAGGTCCTACCGCCATTGGAGAGATGTCCTTTGATGAACATCATCTTAGGCTTGAAAATGCTCGCTTGAGAGAAGAGATCGATCGAATTTCAGCCATAGCAGCAAAATACGTTGGAAAGCCAGTATCAAACTACCCTCTTCTTTCCACACCAATCCCTTCACGTCCTCTAGAACTTGGAATGGGAAGCTATGGAGGCCACGATTTGGGCCTTGGACCGGGAGGCGGGGACATGTTCGGGGCAGCGGACCTTCTAAGGACCATAAGTGCACCATCAGAGGCGGACAAGCCGGTAATCATCGAGCTAGCGGTTGCAGCAATGGAGGAGCTGGTCAGAATGGCTCAGATGGGTGAGCCACTGTGGATGACAGGGGTTGATGGGTCAACGAATGAGCTTAATGAAGAGGAATATGTTAGAAGCTTTCCAAGAGGAATTGGTCCTAAGCCATCTGGGTTTAGCTGTGAAGCTTCTCGTGCTACTGCTGTTGTCATTATGAATCACATTAGCCTCGTTGAGATGCTCATGGATGTGAATCAATGGTCAACAACATTCACAGGGATTGTGTCAAGAGCTATGACATTAGAAGTATTATCAACCGGCGTTGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCCGAATTGCAAGTGCCTTCTCCACTAGTTCCAACTCGGGAGAGCTATTTTGTGAGGTACTGTAAACAACATGGTGAGGGAACATGGGCTGTTGTCGACGTTTCCTTAGACACTTTACGCCCAGCTCCTGCTCTTAGATGTAGAAGAAGGCCATCCGGCTGCTTAATCCAAGAAATGCCCAATGGTTATTCTAAGGTTACATGGGTTGAGCATGTTGAGGTGGATGATCGTGGTGTCCACAGTTTATACAACCAGCTAGTTAGCTCTGGCCACGCGTTCGGCGCAAAGCGTTGGATTGCCACGTTGGATCGTCAGTGTGAACGACTCGCCAGCGCCATGGCCACCAGTATTATTCCTAATGGCGATGCTGGAGTGATAACAAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTGGCAGAGAGAATGGTGATGAGCTTTTGCGGTGGAGTGAGCGCGTCGACAACACACACTTGGACGACTCTGTCGGGAACCGGAGCTGACGACGTTCGAGTTATGACGAGAAAGAGCGTTGACGATCCCGGCAGACCATCCGGCATTGTCCTCAGCGCAGCCACTTCCTTTTGGCTGCCTCTTCCTCCCAACAGAGTCTTCCATTTTCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCAAATGGTGGAGTTGTTCAAGAAATGGCTCACATTGCCAATGGCCGTGACACAGGCAATTGTGTTTCCTTACTACGAGTTAACAGTGCAAATTCAAGCCAAAGTAACATGTTAATATTACAAGAAAGCAGCACAGATCAAACAGCCTCATTCGTGATATACGCACCGGTGGACATTGTGTCAATCAACGTGGTGCTAAACGGGGGAGATCCCGATTATGTGGCTCTTCTGCCATCTGGATTTGCTATTCTTCCCGACGGAAGCACGGCGTCAAGCGGGGGGGCCAATGGCGTGGGGGAACATGGGTCCGGTGGGTCGCTTTTAACGGTGGCGTTTCAGATATTGGTTGACTCGGTTCCCACAGCAAAATTATCTCTTGGGTCAGTTGCGACGGTCAACAATCTCATTGCATGTACGGTTGAGAGAATTAAAGCCTCTTTGTCATGCGACAATCCTTAA 2286 47.73 MPAGMMIPARNTASSMIGRNGNVGIFGSPASLVLGQELQGIEMGENEYGRMRETEEFESGTKSSSENHEVGSGDDQLNNQRPNKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSTPIPSRPLELGMGSYGGHDLGLGPGGGDMFGAADLLRTISAPSEADKPVIIELAVAAMEELVRMAQMGEPLWMTGVDGSTNELNEEEYVRSFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTTFTGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDTLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCERLASAMATSIIPNGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPSGIVLSAATSFWLPLPPNRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVSINVVLNGGDPDYVALLPSGFAILPDGSTASSGGANGVGEHGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCDNP* 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2759169 2766022 + CsaV3_7G003700.1 Csa07g00370 535933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00370 761 Gene3D - 311 495 IPR023393 -
Csa07g00370 761 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Csa07g00370 761 SUPERFAMILY Homeodomain-like 68 141 IPR009057 -
Csa07g00370 761 Gene3D - 71 159 - -
Csa07g00370 761 SMART HOX_1 83 146 IPR001356 GO:0003677
Csa07g00370 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 47 758 IPR042160 -
Csa07g00370 761 ProSiteProfiles START domain profile. 269 501 IPR002913 GO:0008289
Csa07g00370 761 SUPERFAMILY Bet v1-like 518 753 - -
Csa07g00370 761 MobiDBLite consensus disorder prediction 64 78 - -
Csa07g00370 761 CDD homeodomain 85 143 IPR001356 GO:0003677
Csa07g00370 761 CDD START_ArGLABRA2_like 273 497 - -
Csa07g00370 761 Pfam START domain 279 498 IPR002913 GO:0008289
Csa07g00370 761 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 47 758 - -
Csa07g00370 761 MobiDBLite consensus disorder prediction 52 94 - -
Csa07g00370 761 Coils Coil 148 168 - -
Csa07g00370 761 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Csa07g00370 761 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Csa07g00370 761 SUPERFAMILY Bet v1-like 271 500 - -
Csa07g00370 761 SMART START_1 278 498 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01692 Csa-Chr3:12676781 Csa07g00370 Csa-Chr7:2759169 0 dispersed
Csa03g01781 Csa-Chr3:13390651 Csa07g00370 Csa-Chr7:2759169 3.14E-150 dispersed
Csa03g04584 Csa-Chr3:39911797 Csa07g00370 Csa-Chr7:2759169 0 dispersed
Csa06g00579 Csa-Chr6:4976972 Csa07g00370 Csa-Chr7:2759169 0 dispersed
Csa01g01099 Csa-Chr1:6814980 Csa07g00370 Csa-Chr7:2759169 0 wgd
Csa02g02688 Csa-Chr2:23428044 Csa07g00370 Csa-Chr7:2759169 0 wgd
Csa06g03532 Csa-Chr6:28760373 Csa07g00370 Csa-Chr7:2759169 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32259 PF01852 START 1.90E-59 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00370 K09338 - csv:101219415 1476.46