Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00396 ATGGCTTGCAAATGCCTGCCTGGTTTTGAGCCTACCTCTCCAGGGAGTTGGAATATTGGAGATTATTCAGGTGGATGCATTAGGAAATCACCAATATGCAGTGTGGATGCTGACAGTGACACTTTTTTGAGTCTAAAGATGATGAAAGCTGGAAACCCGGACTTCCAGTTTAATGCAAAGGATGACTTCGATTGCAAATTGGAGTGCCTTAACAACTGCCAGTGTCAGGCTTACTCGTATTTGGAAGCTAATATCACAAGGCAGAGTGGGAATTATAATTCTGCTTGTTGGATCTGGTCTGGAGATCTCAACAATCTTCAGGATGAGTTTGATGATGGTCGTGACCTCAATGTTCGAGTAGCAGTTAGAGACCTAGAATCAACTGCCAGAAACTGTGGAACATGTGGAACAAACCTCATTCCTTATCCACTTAGCACAGGACCTAAATGCGGTGACCCCATGTACTTCAATTTTAACTGCAACTTGGCTTCTGGCCAGGTAAACTTTGAAGCAGCAGGTGGAACATACAAGGTTAAATTCATTGATTCAGAAGCACGAAAATTTTACATCCAAACCAAGGAACCGGGTGATTGTGGTGATAAAAACTGGATAACCAAAGCCCTTCAGCTGAACCAGTCATCTCCTTTCCGTGTAACCAGCTGGTGCAACTTTAAGGAGACCAATCTCGAGGAGAATTTTTCTCTGAAAACTAGCAATGAAGTTGAAATCAGTTGGGAGCCTCCACTAGAGCCAATTTGTTCTTCAACTACGGACTGCAAAGACTGGCCTTATTCAACTTGCAACATGAGTAAAGATGGAAATAAAAGATGCCTTTGCATAACAGATTTTCATTGGAATGGCTGGATCTTGAATTGCACTACAGATCACAACAAAGGAAAGGATGGAAAAGGCAAAACGACCTTTTCTGTGATTATTGTTGCAACATCCTTATGTATGGTCCTTCTGATGATTCTCTCATGTACCGTATTTTACATTTACTTCTCCAAAAGTGGGCTCATTGAAAGACAAGAAAGCAGGGGAAACAGCCAAAAAGATTTAATGCTTCACTTGTACGATAATGAGAGACGTGTCAAAGACCTGATTGAATCCGGTCGATTCAAGGAAGATGATACAAATGGAATAGACATTCCATTTTTTGATTTGGAAACCATTCTAGTTGCAACAGATAACTTCTCAAATGCAAACAAGCTTGGCCAGGGAGGCTTTGGGCCAGTTTACAAGGGCAAGTTTCCTAGTGGGCAGGAGATTGCTGTAAAGAGGCTTTCAAGTGGTTCAGGGCAAGGCTTTGAGGAGTTTAAGAATGAGGTTTTATTAATTGCTAAACTTCAGCATCGAAATCTCGTTAGACTCTTGGGCTACTGTGTTGAAGGAGATGAAAAGATGTTGCTTTATGAATATATGCCAAATAAAAGCTTAGACGCCTTTATATTTGATCAAAAGATGAGTGTGGCATTGGATTGGGACATGCGCTTCAACGTCATTTTGGGAATTGCTCGTGGCCTTCTTTATTTACACCAAGATTCGAGGTTGAGAATTATCCATAGAGATTTGAAGACGAGCAATATTCTTCTAGATGAGGAGATGAATCCCAAAATATCCGACTTTGGCTTGGCGAGGATATTTGGAGGGAAAGAAACTGCCACAAATACTAAAAGGGTGGTAGGCACTTATGGATACATGTCACCAGAATATGCATTGGATGGGATATTTTCTGTCAAATCTGATGTCTTTAGCTTCGGTGTAGTCGTAATCGAGATCATTAGTGGAAAAAGGAACACTGGATTCTTTCACTCGGAGAAAGCTTTGAGTCTCCTGGGCTATGCTTGGGATTTATGGATGAAAGACGAAGGCTTGGATTTAATGGAGCAAACACTGAGCGGGAATTGCAAACGAGATGAATATTTGAAGTGTTTAAATGTGGGGCTGTTGTGCGTGCAGGAAGATCCATGGGATCGACCCACCATGTTGAATGTGGTATTCATGCTCGGAAGCGAAACCGCAACTCTTCCATCTCCGAAACCACCAGCTTTCGTCGTACGGCGGTGCCCCTCAAGCAGAGCTTCCTCCTCCACCAAACCAGAAACCTTCTCCCATAATGAGTTGACAGTCACCCTACAAGATGGTAGATAG 2151 42.31 MACKCLPGFEPTSPGSWNIGDYSGGCIRKSPICSVDADSDTFLSLKMMKAGNPDFQFNAKDDFDCKLECLNNCQCQAYSYLEANITRQSGNYNSACWIWSGDLNNLQDEFDDGRDLNVRVAVRDLESTARNCGTCGTNLIPYPLSTGPKCGDPMYFNFNCNLASGQVNFEAAGGTYKVKFIDSEARKFYIQTKEPGDCGDKNWITKALQLNQSSPFRVTSWCNFKETNLEENFSLKTSNEVEISWEPPLEPICSSTTDCKDWPYSTCNMSKDGNKRCLCITDFHWNGWILNCTTDHNKGKDGKGKTTFSVIIVATSLCMVLLMILSCTVFYIYFSKSGLIERQESRGNSQKDLMLHLYDNERRVKDLIESGRFKEDDTNGIDIPFFDLETILVATDNFSNANKLGQGGFGPVYKGKFPSGQEIAVKRLSSGSGQGFEEFKNEVLLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDAFIFDQKMSVALDWDMRFNVILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKETATNTKRVVGTYGYMSPEYALDGIFSVKSDVFSFGVVVIEIISGKRNTGFFHSEKALSLLGYAWDLWMKDEGLDLMEQTLSGNCKRDEYLKCLNVGLLCVQEDPWDRPTMLNVVFMLGSETATLPSPKPPAFVVRRCPSSRASSSTKPETFSHNELTVTLQDGR* 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2907579 2911977 - CsaV3_7G003960.1 Csa07g00396 535959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00396 716 MobiDBLite consensus disorder prediction 691 716 - -
Csa07g00396 716 Gene3D Transferase(Phosphotransferase) domain 1 474 676 - -
Csa07g00396 716 Gene3D Phosphorylase Kinase; domain 1 362 473 - -
Csa07g00396 716 PIRSF SRK 162 287 IPR024171 GO:0004674
Csa07g00396 716 PIRSF SRK 1 141 IPR024171 GO:0004674
Csa07g00396 716 PIRSF SRK 289 716 IPR024171 GO:0004674
Csa07g00396 716 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 713 - -
Csa07g00396 716 ProSiteProfiles PAN/Apple domain profile. 33 121 IPR003609 -
Csa07g00396 716 CDD PAN_AP_plant 33 121 - -
Csa07g00396 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Csa07g00396 716 Pfam PAN-like domain 37 105 IPR003609 -
Csa07g00396 716 Pfam Domain of unknown function (DUF3403) 671 716 IPR021820 GO:0004674
Csa07g00396 716 SUPERFAMILY Protein kinase-like (PK-like) 382 699 IPR011009 -
Csa07g00396 716 Pfam Protein tyrosine and serine/threonine kinase 401 666 IPR001245 GO:0004672|GO:0006468
Csa07g00396 716 CDD STKc_IRAK 404 669 - -
Csa07g00396 716 ProSiteProfiles Protein kinase domain profile. 398 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00396 716 SMART serkin_6 398 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00396 716 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 3 713 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03551 Csa-Chr6:28857428 Csa07g00396 Csa-Chr7:2907579 7.21E-134 dispersed
Csa06g03552 Csa-Chr6:28863435 Csa07g00396 Csa-Chr7:2907579 9.80E-134 dispersed
Csa07g00396 Csa-Chr7:2907579 Csa01g01158 Csa-Chr1:7179029 2.79E-13 dispersed
Csa01g00668 Csa-Chr1:4295378 Csa07g00396 Csa-Chr7:2907579 7.70E-92 transposed
Csa06g00757 Csa-Chr6:6116077 Csa07g00396 Csa-Chr7:2907579 1.70E-09 transposed
Csa01g01157 Csa-Chr1:7173741 Csa07g00396 Csa-Chr7:2907579 5.01E-11 wgd
Csa06g03569 Csa-Chr6:28918339 Csa07g00396 Csa-Chr7:2907579 1.09E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78464 PF07714 PK_Tyr_Ser-Thr 7.10E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00396 - - csv:101217751 1490.32