Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g00414 | ATGACAATTTTCTCCTTCTTCTCTAGAGCTTCCAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTACTTATCAGCACCCTCAGTGGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGGCGGTTCTGTTGAGGAATCACCAAAAAAGAGAGTTCTGGTGCTTGGAACAGGATGGGCCGGCACCAGTTTTCTCAAGGATCTGGATGCTTCAAAATATGACGTTCAGGTTGTTTCGCCTCAAAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGATCAGTTGAAGCACGAAGCATTGTTGAACCGGTTCGGAACATCGTGAAGAAGAGAAAAGGTGAAATTAAGTTCTGGGAAGCTGAATGCCTTAAGATCGATGCTGCTAACAAGAAGGTTTTCTGCCAGTCTAATGTTGACAATAATTTGGTTGGCAATAGGGAGTTTGCCTTAGAATATGACTATTTAGTAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTCAAGGAAAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAGGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGAGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTGGTTAACTTATATCCTTCGGTTAAAGATCTAGTGAAAATTTCAGTAATTCAATCTGGAGATCACATTTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCTGAACAAAAATTCCTAAGAGATGGCATCGATGTATACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTGAGATGAAGGTAAAATCAACTGGAGAATCCTGTTCGATGCCGCATGGACTAATTATCTGGTCTACGGGTATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATTGCCACCATATTTAAAGCTGCAGACAAAGATAACTCTGGTACCCTGACAGTTACAGAATTTCAAGATGTTCTAGATGATATTCTCATAAGGTATCCTCAAGTAGAGATATTTTTGAGGAGCAAACATCTCCGCGATGTAAAAGATCTCTTAAGGGATTCTCAGGGACATGAGAATGAAATAGATATTGAAGGATTTAAGTCAGCTCTTTCTATTGCCGACACGCAGATGAAAAGTCTGCCTGCTACCGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTCCAGGTGCTTCAACCGCAGAGATTATTGCACTGAGAATCCTGAAGGTCCTCGACGTTTTAAGAGTTCTGGACGTCATCAATTTCTTCCCTTTCGGTACAAGCATTTGGGACAGTTCGCTCCTTTAGGAGGAGAACAAGCTGCTGCCGAACTCCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGATATCTAGTGGTATCAGATTGGACAAGAAAGTTCATATTTGGAAGAGATTCGAGCCGCATCTGA | 1725 | 42.2 | MTIFSFFSRASRAFHGSPAYSKLLLISTLSGGGLLAYADSQSDVGGSVEESPKKRVLVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECLKIDAANKKVFCQSNVDNNLVGNREFALEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRGVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVYTGCRVVSVSDKEIEMKVKSTGESCSMPHGLIIWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIATIFKAADKDNSGTLTVTEFQDVLDDILIRYPQVEIFLRSKHLRDVKDLLRDSQGHENEIDIEGFKSALSIADTQMKSLPATAQVAAQQGAYLSRCFNRRDYCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI* | 575 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3027034 | 3032555 | - | CsaV3_7G004140.1 | Csa07g00414 | 535977 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g00414 | 574 | SUPERFAMILY | EF-hand | 329 | 453 | IPR011992 | - | |
Csa07g00414 | 574 | PANTHER | EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL | 44 | 574 | - | - | |
Csa07g00414 | 574 | Gene3D | - | 47 | 397 | - | - | |
Csa07g00414 | 574 | Gene3D | - | 422 | 573 | - | - | |
Csa07g00414 | 574 | SUPERFAMILY | FAD/NAD(P)-binding domain | 219 | 373 | IPR036188 | - | |
Csa07g00414 | 574 | Pfam | Pyridine nucleotide-disulphide oxidoreductase | 54 | 378 | IPR023753 | GO:0016491 | |
Csa07g00414 | 574 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 376 | 411 | IPR002048 | GO:0005509 | |
Csa07g00414 | 574 | SUPERFAMILY | FAD/NAD(P)-binding domain | 53 | 272 | IPR036188 | - | |
Csa07g00414 | 574 | ProSitePatterns | EF-hand calcium-binding domain. | 389 | 401 | IPR018247 | - | |
Csa07g00414 | 574 | PANTHER | NADH DEHYDROGENASE | 44 | 574 | IPR045024 | GO:0003954|GO:0006116 | |
Csa07g00414 | 574 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 56 | 75 | - | - | |
Csa07g00414 | 574 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 159 | 177 | - | - | |
Csa07g00414 | 574 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 220 | 238 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03401 | Csa-Chr3:30692680 | Csa07g00414 | Csa-Chr7:3027034 | 1.93E-07 | dispersed | |
Csa06g01045 | Csa-Chr6:8563267 | Csa07g00414 | Csa-Chr7:3027034 | 0 | dispersed | |
Csa06g01418 | Csa-Chr6:12102922 | Csa07g00414 | Csa-Chr7:3027034 | 7.70E-16 | dispersed | |
Csa01g01519 | Csa-Chr1:10846822 | Csa07g00414 | Csa-Chr7:3027034 | 6.28E-07 | transposed | |
Csa01g01178 | Csa-Chr1:7297188 | Csa07g00414 | Csa-Chr7:3027034 | 0 | wgd | |
Csa06g03594 | Csa-Chr6:29044485 | Csa07g00414 | Csa-Chr7:3027034 | 9.95E-15 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g00414 | K03885 | - | csv:101203130 | 1139.79 |