Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00414 ATGACAATTTTCTCCTTCTTCTCTAGAGCTTCCAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTACTTATCAGCACCCTCAGTGGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGGCGGTTCTGTTGAGGAATCACCAAAAAAGAGAGTTCTGGTGCTTGGAACAGGATGGGCCGGCACCAGTTTTCTCAAGGATCTGGATGCTTCAAAATATGACGTTCAGGTTGTTTCGCCTCAAAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGATCAGTTGAAGCACGAAGCATTGTTGAACCGGTTCGGAACATCGTGAAGAAGAGAAAAGGTGAAATTAAGTTCTGGGAAGCTGAATGCCTTAAGATCGATGCTGCTAACAAGAAGGTTTTCTGCCAGTCTAATGTTGACAATAATTTGGTTGGCAATAGGGAGTTTGCCTTAGAATATGACTATTTAGTAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTCAAGGAAAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAGGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGAGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTGGTTAACTTATATCCTTCGGTTAAAGATCTAGTGAAAATTTCAGTAATTCAATCTGGAGATCACATTTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCTGAACAAAAATTCCTAAGAGATGGCATCGATGTATACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTGAGATGAAGGTAAAATCAACTGGAGAATCCTGTTCGATGCCGCATGGACTAATTATCTGGTCTACGGGTATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATTGCCACCATATTTAAAGCTGCAGACAAAGATAACTCTGGTACCCTGACAGTTACAGAATTTCAAGATGTTCTAGATGATATTCTCATAAGGTATCCTCAAGTAGAGATATTTTTGAGGAGCAAACATCTCCGCGATGTAAAAGATCTCTTAAGGGATTCTCAGGGACATGAGAATGAAATAGATATTGAAGGATTTAAGTCAGCTCTTTCTATTGCCGACACGCAGATGAAAAGTCTGCCTGCTACCGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTCCAGGTGCTTCAACCGCAGAGATTATTGCACTGAGAATCCTGAAGGTCCTCGACGTTTTAAGAGTTCTGGACGTCATCAATTTCTTCCCTTTCGGTACAAGCATTTGGGACAGTTCGCTCCTTTAGGAGGAGAACAAGCTGCTGCCGAACTCCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGATATCTAGTGGTATCAGATTGGACAAGAAAGTTCATATTTGGAAGAGATTCGAGCCGCATCTGA 1725 42.2 MTIFSFFSRASRAFHGSPAYSKLLLISTLSGGGLLAYADSQSDVGGSVEESPKKRVLVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECLKIDAANKKVFCQSNVDNNLVGNREFALEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRGVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVYTGCRVVSVSDKEIEMKVKSTGESCSMPHGLIIWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIATIFKAADKDNSGTLTVTEFQDVLDDILIRYPQVEIFLRSKHLRDVKDLLRDSQGHENEIDIEGFKSALSIADTQMKSLPATAQVAAQQGAYLSRCFNRRDYCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI* 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3027034 3032555 - CsaV3_7G004140.1 Csa07g00414 535977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00414 574 SUPERFAMILY EF-hand 329 453 IPR011992 -
Csa07g00414 574 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 44 574 - -
Csa07g00414 574 Gene3D - 47 397 - -
Csa07g00414 574 Gene3D - 422 573 - -
Csa07g00414 574 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Csa07g00414 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 54 378 IPR023753 GO:0016491
Csa07g00414 574 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Csa07g00414 574 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Csa07g00414 574 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Csa07g00414 574 PANTHER NADH DEHYDROGENASE 44 574 IPR045024 GO:0003954|GO:0006116
Csa07g00414 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Csa07g00414 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Csa07g00414 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03401 Csa-Chr3:30692680 Csa07g00414 Csa-Chr7:3027034 1.93E-07 dispersed
Csa06g01045 Csa-Chr6:8563267 Csa07g00414 Csa-Chr7:3027034 0 dispersed
Csa06g01418 Csa-Chr6:12102922 Csa07g00414 Csa-Chr7:3027034 7.70E-16 dispersed
Csa01g01519 Csa-Chr1:10846822 Csa07g00414 Csa-Chr7:3027034 6.28E-07 transposed
Csa01g01178 Csa-Chr1:7297188 Csa07g00414 Csa-Chr7:3027034 0 wgd
Csa06g03594 Csa-Chr6:29044485 Csa07g00414 Csa-Chr7:3027034 9.95E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00414 K03885 - csv:101203130 1139.79