Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00420 ATGGGTTGGAAGAGATCTTCGAGGAATGGCAATTTGAGGATTTGGGTGCAGGTTTTAGTTGGATTCGTGGTCTGTGCAGCCCAAGTTCTTTTGGGAATTACGAATCCAGGGGATTTTTCTGCTATTAGTAGCTTACATACTGCACTTGGACTCCCCAGTCTTCCTGGATGGGGCATCGGGCAAGACCCATGTGGAGACGCATGGCAGGGTGTTGTTTGTAATGATTCAAGTATCATTAGAATAATCATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAACTTGGGATTGTTTTCTTCAATCCAAACGATTGATTTAAGCAACAATCATATAGGGGGAAGTATACCATCCAATTTACCCGTTACCCTGCAGAATTTTTTTCTTTCAGCTAATCAGTTCACAGGAAGCATTCCGAGTTCATTATCATCCTTGACTCAACTGACAGCAATGTCGTTGAATGATAACAAATTAAGCGGAGAAATACCTGATTCCTTTCAAGTCATTTCTCAATTGGTCAATTTTGACTTATCCAACAACAACTTGAGTGGGCCACTGCCTCCATCTGTCAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAACAATCAGCTGTCAGGAACCCTTGATGTTCTACAAGATCTTCCACTGAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGGTGCTGAGTATCCCTAATTTCAGAAAGGATGGAAACCCATTTAATTCTTCTGTCTCTCCGACATCTCCTCCTGTATCTCCTTCTCCACCATCAAAGCCAGCACCAGCCCCGCCCGTTTCTGGAGGACCACCAGTTTCTGGAGCACCTCCATCTTCTCAACAAAGACCTAAGAAACAGGCTGATGGACCATCGGCTTCTGAGGAATCCAGTTCTGGAAAAAATAAGAAAAGCACTAAAAGGGTTGTTTTAATAACAATTGCAGTGGTTTTGTCTTTCATAATTTTGGTCTTGGCATGCGTGCTCTTTATGCCAAGGTGCAGAAGAAGAAGAAGAAGTGATAGTGTTTCAAAGCGACATCAGATAGGTGCTTATAGGGGTGAGAGAGAGAACGTTGGAAATCAGGGAGCCATGCCCCAAACAAATGATCAGATACCTAAAGTAGTTCCAAAAGAGCCAGTTGTAAGGATGAAGCAGGAGACTCAAACAGAGGTTCAGAAGGTTCCAAAAGATAATGTAGAGAGAGAGAAAAACATGCCAAGAATGAGCGCCATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCACACTCGATGTCTATCTAATGCCTCCTCCTCCCCCTCCCCCTCCCCCACCACCTCCTCCTCCCCCTCCCCCTCCCCCTCCTGTTGAAGAGGTCACTGCCGTGCCCACTGTTCCAGCCGAAGTTCCTCCCTTGAAGCCTCTCACTAAAAATAAAATTACCTTACCTTTTGCGAGACCTTATACCATTGCGTCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGCTGGGAAATGTTTATAGGGCACACCTCCCCAGTGGGAAAGTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCTGCAAAAGGATGATGAGTTTCTCGAGCTGGTCAATAATATTGATAGAATCCGACATGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTTTGAGTATTGCAGTGGTGGAACATTGCAGGATGCACTGCACTCAGACGAAGAGTTCAGAAAGAAGCTTTCATGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATTTGCATGAGGTCTGTCAGCCACCTGTTATTCATAGGAACTTCAAATCTGCGAATATTCTACTGGATGATGATCTTTCAGTGCGTGTTTCAGATTGTGGGCTGGCTCCACTAATATCAAAAGGAGCTGTTAGTCAGCTCTCTGGTCAGCTTCTAACTGCATATGGTTATGGAGCGCCAGAATTTGAATCAGGTGTTTATACACTTGAGAGTGATGTTTACAGCTTTGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTACGACAGAACAAGGATCAGAGGTGAGCAGTTTCTAGTTAGATGGGCAATTCCGCAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCACTCAATGGTCGATACCCTGCCAAGTCCTTATCATACTTTGCCGATATCATATCTAAATGTGTTCAGTCCGAGCCTGAATTCCGGCCACCAATGTCATCAGTTGTTCAAGACTTGCTCAACATGATTAGGAGAGAACCACAAGGCAGTGGTTCAAGTGAGGGTTGA 2379 44.56 MGWKRSSRNGNLRIWVQVLVGFVVCAAQVLLGITNPGDFSAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIRIIINAANLGGELGDNLGLFSSIQTIDLSNNHIGGSIPSNLPVTLQNFFLSANQFTGSIPSSLSSLTQLTAMSLNDNKLSGEIPDSFQVISQLVNFDLSNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVSPTSPPVSPSPPSKPAPAPPVSGGPPVSGAPPSSQQRPKKQADGPSASEESSSGKNKKSTKRVVLITIAVVLSFIILVLACVLFMPRCRRRRRSDSVSKRHQIGAYRGERENVGNQGAMPQTNDQIPKVVPKEPVVRMKQETQTEVQKVPKDNVEREKNMPRMSAIPKKDHHEVDMSTLDVYLMPPPPPPPPPPPPPPPPPPPPVEEVTAVPTVPAEVPPLKPLTKNKITLPFARPYTIASLQQYTNSFSQENLLGEGMLGNVYRAHLPSGKVLAVKKLDKRAFSLQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIFEYCSGGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANILLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRIRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADIISKCVQSEPEFRPPMSSVVQDLLNMIRREPQGSGSSEG* 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3062611 3071172 - CsaV3_7G004200.1 Csa07g00420 535983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00420 792 Pfam Protein tyrosine and serine/threonine kinase 505 776 IPR001245 GO:0004672|GO:0006468
Csa07g00420 792 Gene3D Transferase(Phosphotransferase) domain 1 581 785 - -
Csa07g00420 792 MobiDBLite consensus disorder prediction 281 306 - -
Csa07g00420 792 SUPERFAMILY Formin homology 2 domain (FH2 domain) 447 457 - -
Csa07g00420 792 Gene3D Phosphorylase Kinase; domain 1 475 579 - -
Csa07g00420 792 ProSiteProfiles Protein kinase domain profile. 502 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00420 792 MobiDBLite consensus disorder prediction 247 312 - -
Csa07g00420 792 MobiDBLite consensus disorder prediction 255 280 - -
Csa07g00420 792 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 23 790 - -
Csa07g00420 792 Gene3D Ribonuclease Inhibitor 143 254 IPR032675 -
Csa07g00420 792 PANTHER OS01G0253100 PROTEIN 23 790 IPR045271 GO:0004714|GO:0006468
Csa07g00420 792 SUPERFAMILY Protein kinase-like (PK-like) 479 776 IPR011009 -
Csa07g00420 792 Gene3D Ribonuclease Inhibitor 43 142 IPR032675 -
Csa07g00420 792 MobiDBLite consensus disorder prediction 434 461 - -
Csa07g00420 792 SUPERFAMILY L domain-like 54 241 - -
Csa07g00420 792 MobiDBLite consensus disorder prediction 435 461 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00420 Csa-Chr7:3062611 Csa07g02300 Csa-Chr7:21374921 7.27E-35 dispersed
Csa06g03601 Csa-Chr6:29085557 Csa07g00420 Csa-Chr7:3062611 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78466 PF07714 PK_Tyr_Ser-Thr 5.50E-42 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00420 - - csv:101213734 1395.95