Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00429 ATGGGTGGGTGTGTCTCTACAAGCAGCCATAGTACATGTAGTAGCCAAAGCAATGGGGAATCAGTTTCTTCTTCATGTATGGGAATTGGATTTGTATGTCGAAAGCGAACAAAAAGAACATTCTCGGACCATGTTTATGCTCTTCAGAATCTTCCTTCAGCTCCTAACAGGATCTTCATGAATGGAAAAAGTCGTTCTTCATGCATTTTCACTCAACAAGGTCGCAAGGGGATAAACCAGGATGCCATGGTTGTGTGGGAAGATTTCATGTCAGAGGACACGATCTTTTGTGGTGTGTTCGATGGACATGGACCTTACGGTCATCTCGTTGCTCGTAAAGTGAGGGATACATTGCCGATAAAGTTGCTGTCATTCTTCCAGTCTCCTCAGTTGAAGCAAAATGACTCTGGGAAAACCTGTTTCCAGAGGAATTTGAAGACACCTCCAGATTGTGAGGATTCTGAGAAAGATGGTTTTGTAGAGGACTCGCAGAATTCAGTATGGAAAGATGCATTTTTGAACTCGTATAAAGCTATGGATAAGGAGTTGAGATCACATCCTAATCTGGACTGCTTTTGTAGTGGTAGTACTGCAGTTACCATAGTTAAACAGGGGTCAAATCTGTTCATGGGGTATATTGGGGATTCAAGAGCAATCCTAGCTTCGAAGGATGCCAATGATTCCACTGTGGCAGTTCAATTAACCGTGGATCTTAAGCCAGATTTGCCAAGAGAAGCTGAAAGAATAAAACGGTGTAAAGGCAGGGTCTTTGCATTGCAGGATGAGCCAGAAGTGCCAAGGGTGTGGTTACCTTTCGATGATGCTCCCGGTTTAGCAATGGCTCGAGCATTTGGTGACTTCTGTTTGAAAGAATATGGGGTTATCTCTATACCTGAATTCTCTCATCGAACCCTAACCGATGCTGATCAGTTCATCGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTATCCTCAGCCCCAACCCGGGCATCAGCTGCGAGGTCCGTGGTGGACTCAGCTGCTCGTGAATGGAAACTCAAATACCCTACCTCGAAAATGGATGACTGTGCAGTCGTCTGCTTATTTTTGGACAGGAGGATGGACTCTGAATCTGACTGTGACGAACAAGCCTTCTCATCTGCAACATTGCGTAGTAATCATTCGGGTACAGCTATTGAATCCGATGATGGCCAAAGGTCCGAGCCATGTTTGCAAAGGAATAACACTGTCAGATCATCCGAAGGAAGCAAGGGATTACCTGTTGACGACATGGAGATTGGCGATGCTGTACCTGCAGAAGATCAAAACTGGTTGGGTTTGGAAGGAGTCACTCGAGTGAACTCACTTGTTCAACTCCCTAGATTTTCCGAGGAAAGGCCTGTGTCATAG 1416 45.2 MGGCVSTSSHSTCSSQSNGESVSSSCMGIGFVCRKRTKRTFSDHVYALQNLPSAPNRIFMNGKSRSSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSFFQSPQLKQNDSGKTCFQRNLKTPPDCEDSEKDGFVEDSQNSVWKDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFIVLASDGVWDVLSNEEVVDIVSSAPTRASAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDRRMDSESDCDEQAFSSATLRSNHSGTAIESDDGQRSEPCLQRNNTVRSSEGSKGLPVDDMEIGDAVPAEDQNWLGLEGVTRVNSLVQLPRFSEERPVS* 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3097301 3101342 - CsaV3_7G004290.1 Csa07g00429 535992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00429 471 MobiDBLite consensus disorder prediction 1 24 - -
Csa07g00429 471 PANTHER ALPHABET, ISOFORM E-RELATED 1 459 - -
Csa07g00429 471 MobiDBLite consensus disorder prediction 393 439 - -
Csa07g00429 471 Pfam Protein phosphatase 2C 163 349 IPR001932 -
Csa07g00429 471 ProSiteProfiles PPM-type phosphatase domain profile. 66 372 IPR001932 -
Csa07g00429 471 SUPERFAMILY PP2C-like 56 373 IPR036457 -
Csa07g00429 471 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 459 - -
Csa07g00429 471 MobiDBLite consensus disorder prediction 393 424 - -
Csa07g00429 471 Gene3D - 56 375 IPR036457 -
Csa07g00429 471 SMART PP2C_4 55 370 IPR001932 -
Csa07g00429 471 CDD PP2Cc 65 372 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00378 Csa-Chr6:3142443 Csa07g00429 Csa-Chr7:3097301 9.20E-142 dispersed
Csa06g01776 Csa-Chr6:15614294 Csa07g00429 Csa-Chr7:3097301 4.53E-97 dispersed
Csa07g00429 Csa-Chr7:3097301 Csa06g01632 Csa-Chr6:14302753 3.40E-28 dispersed
Csa07g00429 Csa-Chr7:3097301 Csa02g00474 Csa-Chr2:3366498 1.43E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00429 - - csv:101204594 935.636