Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00434 ATGGCGGAGGATAAGAAAACAGGGAAATTGAAGATGGTTATCGATGCAAATACTCCAGACAAGAAGATTGAGAAAGGGAAACACGTTGCAGCTGTTAGCTTGGAGAGGCAACAATGGAAGCCAGTTTTAGATGATGCTTTCTTGTCTAGAAGACCTCTCAAGAAAATCTGCAGTTCTGATTTTCATAACCCATTTCTTCATTCCCCTCTTTCTCTTTCTCCCCCTTCTTCTAAAATCCAATTTCCTTTCGATTTCGAGGCATCTCAACATTCATCAATAACAACCACGACAACAACAACACAGTTTAATTCTCAACATCCGATTTCTTCCTCTTCTTCTTCTTCCTCTCCCTTTACGGCCTTCGGGTCTCCGGAGCAACAGATGATTTCCTTTAGTTCCAATCAACAACAGGGATTTGGCTTTCCGCCCTACTTCCTCAACGGAGACCCGGTGGCATCGCAGCAGAGACTTTTCAAGTACTGGAGTGATGCGTTTCATTTGAGTCCAAGAGGAAGAGCTATGATGATGAGTAGATTCGGCCCGGATGGAGGTAATTTGTTTCGGCCGCCATTGCAGCCCATAAGTGCCACTAAGCTTTACAGAGGAGTTCGACAGCGGCATTGGGGGAAATGGGTGGCCGAAATTCGTCTCCCTCGTAACCGAACTCGTCTTTGGCTCGGAACTTTCGACACCGCTGAAGACGCCGCCATGGCTTACGATCGTGAAGCCTTCAAATTACGAGGCGAAAATGCTCGACTCAATTTCCCTGATCGTTTCTTCAAGAAAGACATTCCAAAAACAGAGGCAGAAACAGAGCATACAATTCCAATAACAGAAGAAGCTCATCCCGAAAACTTTATCCTTCTTCCGCCGCCAGAAGAAGAAAAACCAAATAACGACTTGACGGAGAGCGGCAGCTGCGCATCTGAGCCGACGGAGATGGTATGGGGAGAAATGGAAGAGGCTTGGTTTAATGCGATTCCGGCCGGTTGGGGTCCAGGAAGCGCGGTTTGGGATAATCTAGACCCAACAAACAATTTAGTTCTTCAATCACAAATCCCATTTGGTTCTTCAAATGAGCAACAGATGAACGAATCCAACGATAATCAGAACAAGCTTGAAACTTCCGAATCGGCTTCGTCTTCGTCTACGTCTGCTCCCACGAAGCTTTTCTTATGGAAAGATCAAGATTGA 1194 45.9 MAEDKKTGKLKMVIDANTPDKKIEKGKHVAAVSLERQQWKPVLDDAFLSRRPLKKICSSDFHNPFLHSPLSLSPPSSKIQFPFDFEASQHSSITTTTTTTQFNSQHPISSSSSSSSPFTAFGSPEQQMISFSSNQQQGFGFPPYFLNGDPVASQQRLFKYWSDAFHLSPRGRAMMMSRFGPDGGNLFRPPLQPISATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPDRFFKKDIPKTEAETEHTIPITEEAHPENFILLPPPEEEKPNNDLTESGSCASEPTEMVWGEMEEAWFNAIPAGWGPGSAVWDNLDPTNNLVLQSQIPFGSSNEQQMNESNDNQNKLETSESASSSSTSAPTKLFLWKDQD* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3130847 3133251 + CsaV3_7G004340.1 Csa07g00434 535997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00434 397 ProSiteProfiles AP2/ERF domain profile. 199 256 IPR001471 GO:0003700|GO:0006355
Csa07g00434 397 Pfam AP2 domain 200 248 IPR001471 GO:0003700|GO:0006355
Csa07g00434 397 MobiDBLite consensus disorder prediction 92 120 - -
Csa07g00434 397 Gene3D AP2/ERF domain 199 257 IPR036955 GO:0003700|GO:0006355
Csa07g00434 397 SUPERFAMILY DNA-binding domain 199 258 IPR016177 GO:0003677
Csa07g00434 397 MobiDBLite consensus disorder prediction 354 397 - -
Csa07g00434 397 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 18 284 - -
Csa07g00434 397 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 295 394 - -
Csa07g00434 397 PRINTS Ethylene responsive element binding protein signature 200 211 IPR001471 GO:0003700|GO:0006355
Csa07g00434 397 PRINTS Ethylene responsive element binding protein signature 222 238 IPR001471 GO:0003700|GO:0006355
Csa07g00434 397 SMART rav1_2 199 262 IPR001471 GO:0003700|GO:0006355
Csa07g00434 397 CDD AP2 198 257 IPR001471 GO:0003700|GO:0006355
Csa07g00434 397 MobiDBLite consensus disorder prediction 289 308 - -
Csa07g00434 397 MobiDBLite consensus disorder prediction 354 391 - -
Csa07g00434 397 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 18 284 - -
Csa07g00434 397 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 295 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03172 Csa-Chr6:27003092 Csa07g00434 Csa-Chr7:3130847 5.95E-31 dispersed
Csa07g00434 Csa-Chr7:3130847 Csa06g02825 Csa-Chr6:24644291 9.78E-25 dispersed
Csa01g01689 Csa-Chr1:13278059 Csa07g00434 Csa-Chr7:3130847 1.17E-32 transposed
Csa02g00938 Csa-Chr2:8854159 Csa07g00434 Csa-Chr7:3130847 6.75E-28 transposed
Csa04g01841 Csa-Chr4:18031783 Csa07g00434 Csa-Chr7:3130847 4.68E-33 transposed
Csa06g01107 Csa-Chr6:9141584 Csa07g00434 Csa-Chr7:3130847 7.90E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32270 PF00847 AP2 2.50E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00434 - - csv:101205560 768.074