Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00436 ATGCACCTCCGCCCTCGGTACTTATGGAATGTTATAATGTTGGTGAATTTTGTACTGGTGGGGAAGTTTGTTCTCGTTGATTCAACTCAGCAGCTTCCAAACCGTACTACCGCAGCTTCGCATTGGCTCCCCGCCACCGCCACTTGGTATGGCAGCCCAGAAGGCGACGGCAGCGACGGTGGGGCATGTGGGTACGGTAGTTTGGTGGACGTGAAGCCATTCAAAGCAAGAGTAGGGGCAGTGAGTCCAATCCTGTTCAAGGACGGGGAAGGGTGTGGTGCGTGCTACAAAGTTCGGTGCTTGGATCGAGCCATATGCGCTAGACGGGCAGTTACCATCATAGTAACTGACGAGTGTCCAGGTGGGTACTGTGCAAATGGCCGGACTCACTTTGATCTGAGTGGTGCCGCCTTTGGACGTATGGCGGTGGCTGGTGCGGGCAGCCGTCTCCGAGACCGAGGGGAATTGACTGTAGCGTACAGAAGGACTCCATGTAGGTACAGAGGAAAGAATATAGCGTTCCATGTGAATGAAGGTTCTACAGATCATTGGCTTTCGCTTTTGGTGGAGTTTGAGGATGGAGATGGAGATCTTGGTTCTATGCAAATCAGACAAGCAAATTCAAAAGAGTGGATGGAGATGGCACATGTGTGGGGTGCAACATGGTGCATAAATGGAGGGCCTTTAAAGGGTCCATTTTCAGTGAAGGTAACAACATTATCCACAGCTAAAACTCTCTCAGCCAGAGATGTTATTCCAAGGAATTGGTCTCCAAAGGCAACTTACACTTCTCGCTTGAACTTCTCCTAA 810 50.49 MHLRPRYLWNVIMLVNFVLVGKFVLVDSTQQLPNRTTAASHWLPATATWYGSPEGDGSDGGACGYGSLVDVKPFKARVGAVSPILFKDGEGCGACYKVRCLDRAICARRAVTIIVTDECPGGYCANGRTHFDLSGAAFGRMAVAGAGSRLRDRGELTVAYRRTPCRYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDLGSMQIRQANSKEWMEMAHVWGATWCINGGPLKGPFSVKVTTLSTAKTLSARDVIPRNWSPKATYTSRLNFS* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3137269 3140488 - CsaV3_7G004360.1 Csa07g00436 535999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00436 269 SUPERFAMILY PHL pollen allergen 170 264 IPR036749 -
Csa07g00436 269 Gene3D - 167 269 IPR036749 -
Csa07g00436 269 SUPERFAMILY Barwin-like endoglucanases 36 169 IPR036908 -
Csa07g00436 269 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Csa07g00436 269 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Csa07g00436 269 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Csa07g00436 269 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Csa07g00436 269 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Csa07g00436 269 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576
Csa07g00436 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 170 IPR007112 -
Csa07g00436 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 264 IPR007117 -
Csa07g00436 269 PANTHER EXPANSIN-B17 13 268 - -
Csa07g00436 269 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Csa07g00436 269 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576|GO:0019953
Csa07g00436 269 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576|GO:0019953
Csa07g00436 269 PRINTS Major pollen allergen Lol pI signature 174 189 IPR005795 GO:0005576|GO:0019953
Csa07g00436 269 PRINTS Major pollen allergen Lol pI signature 190 205 IPR005795 GO:0005576|GO:0019953
Csa07g00436 269 PRINTS Major pollen allergen Lol pI signature 240 257 IPR005795 GO:0005576|GO:0019953
Csa07g00436 269 Pfam Expansin C-terminal domain 172 253 IPR007117 -
Csa07g00436 269 SMART dpbb_1 78 160 IPR007112 -
Csa07g00436 269 Gene3D - 26 166 IPR036908 -
Csa07g00436 269 PANTHER EXPANSIN-B3 13 268 - -
Csa07g00436 269 Pfam Lytic transglycolase 80 147 IPR009009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g01104 Csa07g00436 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00436 Csa-Chr7:3137269 Csa02g01712 Csa-Chr2:16862254 9.03E-36 dispersed
Csa01g03272 Csa-Chr1:29035110 Csa07g00436 Csa-Chr7:3137269 2.61E-26 transposed
Csa03g00739 Csa-Chr3:6584510 Csa07g00436 Csa-Chr7:3137269 2.67E-77 transposed
Csa06g01104 Csa-Chr6:9119830 Csa07g00436 Csa-Chr7:3137269 1.73E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00436 K20628 - csv:101205324 557.37