Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00466 ATGGCTTCCACTAAAGAACGCGACAACTTCGTTTACATCGCTAAGCTCGCTGAGCAGGCCGAGCGTTATGATGAAATGGTGGATGCAATGAAGAATGTTGCAAAGCTGGATGTTGAATTGACAGTTGAGGAAAGAAACTTGCTTTCTGTTGGATACAAGAATGTGGTTGGTGCACGGAGAGCCTCGTGGAGGATATTATCATCAATAGAGCAGAAAGAAGAAGCTAAAGGAAATGAAACAAATGCTAAACGCATCAAAGAATACAGACAAAAGGTTGAATCAGAGCTCTCTGGTATTTGCAATGATATCATGATGGTGATTGACGAGCACCTGATTCCATCGGCTTCAGCTGGGGAATCAACAGTATTCTACTATAAGATGAAAGGAGACTATTATCGTTACCTTGCAGAATTTAAATCTGGTAATGAGAAGAAAGATGCAGCTGATCAATCGATGAAAGCATATGAGGCTGCAACCAGCTCAGCCGAATCTGAGTTACCCCCTACACATCCTATCCGCTTGGGGTTGGCATTAAATTTCTCTGTCTTCTATTATGAAATTTTGAATTCACCTGAAAGGGCTTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCCATTTCTGAACTTGACACCCTGAATGAAGAGTCATACAAAGATAGCACCTTAATCATGCAGCTTCTTAGGGACAACCTTACATTATGGACTTCTGACATCCCAGAAGATGGAGATGATGCCCAAAAGATCAATGGAACTGCCAAGGTTCCCGGTGGTGACGATGCCGAGTGA 786 42.75 MASTKERDNFVYIAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNETNAKRIKEYRQKVESELSGICNDIMMVIDEHLIPSASAGESTVFYYKMKGDYYRYLAEFKSGNEKKDAADQSMKAYEAATSSAESELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDDAQKINGTAKVPGGDDAE* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3372382 3375317 - CsaV3_7G005650.1 Csa07g00466 536029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00466 261 Coils Coil 13 33 - -
Csa07g00466 261 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Csa07g00466 261 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Csa07g00466 261 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Csa07g00466 261 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Csa07g00466 261 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Csa07g00466 261 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Csa07g00466 261 Coils Coil 261 261 - -
Csa07g00466 261 PANTHER 14-3-3 PROTEIN 4 246 IPR000308 -
Csa07g00466 261 SMART 1433_4 7 248 IPR023410 -
Csa07g00466 261 Coils Coil 195 215 - -
Csa07g00466 261 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Csa07g00466 261 MobiDBLite consensus disorder prediction 238 261 - -
Csa07g00466 261 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Csa07g00466 261 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Csa07g00466 261 Gene3D - 1 249 IPR036815 -
Csa07g00466 261 Pfam 14-3-3 protein 14 235 IPR023410 -
Csa07g00466 261 PANTHER 14-3-3 DOMAIN-CONTAINING PROTEIN-RELATED 4 246 - -
Csa07g00466 261 PIRSF 14-3-3 1 247 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04446 Csa-Chr3:38780965 Csa07g00466 Csa-Chr7:3372382 1.93E-138 dispersed
Csa06g02080 Csa-Chr6:18583648 Csa07g00466 Csa-Chr7:3372382 9.65E-147 dispersed
Csa07g00466 Csa-Chr7:3372382 Csa02g02151 Csa-Chr2:19444483 1.54E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00466 K06630 - csv:101208446 507.294