Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00476 ATGGACCGCCGTGTTCGTACAAACCCATTCCTCTCCGAACAGGAAGATCCCGAAGCCACCTCCGACGACGGCTTACCCGAATCACCCTCCGACTGCAATGACTCAAAACCCACCGCTGCTCCACCTCCTAAGAAGAGTAGAAGGGGAGTGCAGAAGAGAGTGGTGTCCGTACCGATCACTGACGTGGAAGGATCTAAAAGCAAAGGGGAGGCATATCCACCGTCCGATTCATGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAAGGTTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGTTCCAAGGGATGCCCAGCAAGAAAGCAAGTAGAGAGAAGCCGTGTGGATCCCACCAAGCTCGTTATTACCTACGCCTTCGACCACAACCACCAACTCCCGGTCACCAAATCTCACCACCACCACCATCATAATTCCTCCCCGTCCTCTGCCGTGATCGCCGCCGTATCTGCCGCAACCGACTTTCCTTCTCCAGGGAGCACTACGACGTCGTCCTCCACTTCATCCGGCGACAACACCAACGCCGCCCCGTCGTCTCCGGCGGCGAAGTTTGAGGAGGCGGCTGCGGTTTTCGCGAGTCAGCCGGAACTGGAACTCGGAGGCGACTCGCTGATGATAAAACCATGCATCGGAGATTTCGGGTGGTTGGGTGAGGTGGCGTATGACAGAATCCTTGAGGGCCCGATTTGCGGAGGTGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCCACTAGAGGAGATGACGAGGAGGAGTCGTTATTTGCGGATCTTGGGGAATTACCCGAAGGATCGGTGGTGTTCGGCCGACGGCGAACGGTCCAACCGAACGGACCGAACCGGACATGTGGCACAGTTTTAAACTGCTAG 897 55.63 MDRRVRTNPFLSEQEDPEATSDDGLPESPSDCNDSKPTAAPPPKKSRRGVQKRVVSVPITDVEGSKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPVTKSHHHHHHNSSPSSAVIAAVSAATDFPSPGSTTTSSSTSSGDNTNAAPSSPAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWLGEVAYDRILEGPICGGGDIFDDADVMVLSTRGDDEEESLFADLGELPEGSVVFGRRRTVQPNGPNRTCGTVLNC* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3456072 3459066 + CsaV3_7G005750.1 Csa07g00476 536039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00476 298 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00476 298 MobiDBLite consensus disorder prediction 162 189 - -
Csa07g00476 298 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 20 284 IPR044810 GO:0003700
Csa07g00476 298 MobiDBLite consensus disorder prediction 162 187 - -
Csa07g00476 298 Gene3D WRKY domain 61 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa07g00476 298 SMART WRKY_cls 74 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00476 298 SUPERFAMILY WRKY DNA-binding domain 70 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa07g00476 298 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g00476 298 MobiDBLite consensus disorder prediction 1 77 - -
Csa07g00476 298 PANTHER OS01G0750100 PROTEIN 20 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02431 Csa-Chr4:24478962 Csa07g00476 Csa-Chr7:3456072 2.40E-28 dispersed
Csa06g03875 Csa-Chr6:30645979 Csa07g00476 Csa-Chr7:3456072 5.59E-35 dispersed
Csa07g00476 Csa-Chr7:3456072 Csa01g02192 Csa-Chr1:19017073 2.97E-28 dispersed
Csa01g02303 Csa-Chr1:20150144 Csa07g00476 Csa-Chr7:3456072 4.39E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32275 PF03106 WRKY 1.20E-24 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00476 - - csv:101209422 561.607