Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00478 ATGATTTCTAGATCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAAGAAGCGATTTCCGCGGGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGATGATGATCAAGCCTACAGTGTCACGTCTGAAAACCCGTCCTCAATTTCGTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAACGAAGGGAGGATGATAATTCATGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCAGAAGATATGGAGATTCTCTACGTTGGTTCGTTGAAAGTCGATATCCAACCAGAAGAACAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTGCATTTTTGCCTCCTCATATATTGGAAAATTTTTATGATGGCTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGTTGCCATACTCTGCTGATCAGAAGGGTCGATTCGATCGCTCCATGTGGGAAGCTTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTCGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTACCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATTGGATTCCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGCAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGAACGATTGGGATAAAAATAATGCCTGTTGGTATTCATATGAGTCGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCCAAGACTAGGGAACTCACGCAGCAATTTGCAGGGAAGACGGTGTTGCTTGGTGTTGATGATTTGGACATTTTCAAAGGTATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCAAAGTGGCAAGGGAAGGCTGTACTGATCCAAATTGTAAATCCTGCCAGAGGTAAGGGAAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGTAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTATGAGCCAATAGTACTTCTCGACAGGCATGTGCCGATCACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTAACTGCTGTTAGAGATGGTATGAACCTAACTCCTTATGAGTACGTTGTATGTAGACAGGGAATATCCACCTCCCAAAAATGTTTGAACTTCAGTGGACCAAAAAAGAGCATGCTCGTCATATCTGAATTTATTGGGTGCTCTCCATCACTAAGTGGAGCATTTCGTGTTAATCCATGGAATGTGGAAAAGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGGCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTACGTTGCCACACACGATGTCGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGAAGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTGTCAGTAGATGCCATTGTATCATCTTACAGTAGGGCCGAAAGTCGGGCCATTCTCTTGGACTATGATGGCACTGTGATGCCCCAAAACTCCATAAATAAGTCACCTAGTGCGCAGGTTATCTCTATCCTTAATACGCTTTGTGCAGATGCAAAAAACGTGGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGTCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGCAGTCACAAAACGAAGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCACATTGCCGAGCCTGTTATGAAATTATATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTTTGGCAGTATAGAGATGCGGATCCTGGTTTCGGATCATCCCAGGCAAAGGAGATGTTGGATCATTTAGAAAGTGTTTTGGCAAACGAACCTGTTGCAGTCAAAAGCGGCCAATTTATCGTAGAAGTGAAACCACAGGGGGTTACCAAAGGCCTTGTGGCTGAAAAGATCTTTTCATCAATGGCAGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGTATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCATTGTCCAGTAACATTCTTTCTCCAACAACGTCGGTTTTTGCCTGCACTGTTGGACAAAAACCAAGCAAAGCCAAATATTATTTAGATGACACAGCCGAAGTAATAAGCATGCTTGAGTACCTGGCTGAAGCTTCTAGTCCATTACCATCCTCTGATGATGAAGAAGGTGAAAATGCTTCTTGA 2571 41.93 MISRSYTNLLDLASGNFPAMEVKKKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEILYVGSLKVDIQPEEQDEVSQILLEKFRCIPAFLPPHILENFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTSQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVEKTAEALNEAISMADSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSAQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMHIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS* 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3465683 3473151 + CsaV3_7G005770.1 Csa07g00478 536041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00478 856 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Csa07g00478 856 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 796 IPR006379 -
Csa07g00478 856 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Csa07g00478 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Csa07g00478 856 Gene3D Glycogen Phosphorylase B; 314 527 - -
Csa07g00478 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 850 IPR001830 GO:0003824|GO:0005992
Csa07g00478 856 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 850 - -
Csa07g00478 856 TIGRFAM T6PP: trehalose-phosphatase 588 838 IPR003337 GO:0003824|GO:0005992
Csa07g00478 856 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0003824|GO:0005992
Csa07g00478 856 CDD HAD_TPP 591 830 - -
Csa07g00478 856 Gene3D - 718 850 IPR023214 -
Csa07g00478 856 Gene3D - 589 691 IPR023214 -
Csa07g00478 856 Gene3D Glycogen Phosphorylase B; 53 313 - -
Csa07g00478 856 SUPERFAMILY HAD-like 590 838 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00478 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101209914 1727.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02256 Csa-Chr4:23161353 Csa07g00478 Csa-Chr7:3465683 6.34E-139 dispersed
Csa03g00151 Csa-Chr3:1167633 Csa07g00478 Csa-Chr7:3465683 0 transposed
Csa06g03720 Csa-Chr6:29732744 Csa07g00478 Csa-Chr7:3465683 0 transposed
Csa01g02281 Csa-Chr1:19948842 Csa07g00478 Csa-Chr7:3465683 1.30E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g130 . . . . . . . . Cmo11g01986 Cmo19g01042 . . . . Sed14g1529 Cpe15g00820 Cpe04g00803 Bhi05g01942 Tan02g0192 Cmetu04g0191 Lac12g0751 Hepe02g0118 . . . . . . . . . Cone3ag1433 Cone10ag1362 . . . Csa07g00478 . Cme01g00311 . . . . . . . . . . . Cma11g01907 Cma19g01006 . Car19g00792 . . . . . . . . . . . . . . . . . . Chy01g00326 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g00202 . 45 596 Trehalose Biosynthesis Gene Families AT4G24040 56.6 2.0e-190 662.5
Csa07g00478 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1373.6
Csa06g03720 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1350.5
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1093.2
Csa01g00164 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.2e-304 1041.6
Csa04g02256 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.7e-248 855.5
Csa01g02281 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.8 7.1e-242 833.6
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.4 0.0e+00 1349.0
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1213.4
Csa03g00151 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1109.7
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1109.7
Csa07g00478 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.7 0.0e+00 1095.5
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.5 0.0e+00 1327.4
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 68.0 0.0e+00 1231.9
Csa06g03720 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.3 0.0e+00 1084.3
Csa03g00151 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Csa07g00478 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-312 1067.4
Csa03g00151 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.5 0.0e+00 1266.1
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Csa07g00478 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.9 0.0e+00 1138.6
Csa05g02351 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.6
Csa01g00164 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1093.6
Csa05g02351 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1195.6
Csa01g00164 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Csa06g03720 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.5 6.4e-293 1003.4
Csa07g00478 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 3.5e-291 997.7
Csa03g00151 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.9e-285 977.2
Csa04g02256 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.5
Csa01g02281 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.3 0.0e+00 1357.4
Csa05g02351 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.8e-306 1048.5
Csa01g00164 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 7.4e-300 1026.5
Csa06g03720 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.8e-299 1024.6
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.4e-298 1021.5
Csa07g00478 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 2.0e-289 991.9
Csa03g00151 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1381.7
Csa06g03720 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1186.0
Csa07g00478 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.0 0.0e+00 1156.7
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.6
Csa01g00164 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1107.4
Csa04g02256 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.6 1.3e-303 1038.9
Csa01g02281 . 92 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 4.1e-289 990.7
Csa04g02256 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.5
Csa01g02281 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.3 0.0e+00 1357.4
Csa04g02256 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.7e-248 855.5
Csa01g02281 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.8 7.1e-242 833.6
Csa04g02256 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 3.8e-194 675.2
Csa01g02281 . 92 610 Trehalose Biosynthesis Gene Families AT1G17000 61.7 1.1e-190 663.7
Csa04g02256 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.6 1.3e-303 1038.9
Csa01g02281 . 92 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 4.1e-289 990.7
Csa03g00151 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1381.7
Csa06g03720 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1186.0
Csa07g00478 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.0 0.0e+00 1156.7
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.6
Csa01g00164 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1107.4
Csa03g00151 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.5 0.0e+00 1266.1
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Csa07g00478 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.9 0.0e+00 1138.6
Csa05g02351 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.6
Csa01g00164 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1093.6
Csa07g00478 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1373.6
Csa06g03720 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1350.5
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1093.2
Csa01g00164 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.2e-304 1041.6
Csa05g02351 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1195.6
Csa01g00164 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Csa06g03720 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.5 6.4e-293 1003.4
Csa07g00478 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 3.5e-291 997.7
Csa03g00151 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.9e-285 977.2
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.4 0.0e+00 1349.0
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1213.4
Csa03g00151 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1109.7
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1109.7
Csa07g00478 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.7 0.0e+00 1095.5
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.5 0.0e+00 1327.4
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 68.0 0.0e+00 1231.9
Csa06g03720 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.3 0.0e+00 1084.3
Csa03g00151 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Csa07g00478 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-312 1067.4
Csa05g02351 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.8e-306 1048.5
Csa01g00164 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 7.4e-300 1026.5
Csa06g03720 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.8e-299 1024.6
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.4e-298 1021.5
Csa07g00478 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 2.0e-289 991.9
Csa05g00202 . 45 596 Trehalose Biosynthesis Gene Families AT4G24040 56.6 2.0e-190 662.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00478 Csa_Chr07 FPKM 13.174169 12.940794 28.57011 30.530411 16.750605 17.046513 18.068678 16.724367 16.919647 17.839262