Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00478 ATGATTTCTAGATCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTGAAAAAGAAGCGATTTCCGCGGGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGATGATGATCAAGCCTACAGTGTCACGTCTGAAAACCCGTCCTCAATTTCGTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAACGAAGGGAGGATGATAATTCATGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGCTTACCAGAAGATATGGAGATTCTCTACGTTGGTTCGTTGAAAGTCGATATCCAACCAGAAGAACAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTGCATTTTTGCCTCCTCATATATTGGAAAATTTTTATGATGGCTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGTTGCCATACTCTGCTGATCAGAAGGGTCGATTCGATCGCTCCATGTGGGAAGCTTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTCGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTACCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATTGGATTCCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGCAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGAACGATTGGGATAAAAATAATGCCTGTTGGTATTCATATGAGTCGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCCAAGACTAGGGAACTCACGCAGCAATTTGCAGGGAAGACGGTGTTGCTTGGTGTTGATGATTTGGACATTTTCAAAGGTATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCAAAGTGGCAAGGGAAGGCTGTACTGATCCAAATTGTAAATCCTGCCAGAGGTAAGGGAAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGTAGAAGGATCAACAAGGAGTATGGGCATCCTGGTTATGAGCCAATAGTACTTCTCGACAGGCATGTGCCGATCACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGTGTAGCTGTAACTGCTGTTAGAGATGGTATGAACCTAACTCCTTATGAGTACGTTGTATGTAGACAGGGAATATCCACCTCCCAAAAATGTTTGAACTTCAGTGGACCAAAAAAGAGCATGCTCGTCATATCTGAATTTATTGGGTGCTCTCCATCACTAAGTGGAGCATTTCGTGTTAATCCATGGAATGTGGAAAAGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGGCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTACGTTGCCACACACGATGTCGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGAAGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTGTCAGTAGATGCCATTGTATCATCTTACAGTAGGGCCGAAAGTCGGGCCATTCTCTTGGACTATGATGGCACTGTGATGCCCCAAAACTCCATAAATAAGTCACCTAGTGCGCAGGTTATCTCTATCCTTAATACGCTTTGTGCAGATGCAAAAAACGTGGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGTCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGCAGTCACAAAACGAAGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCACATTGCCGAGCCTGTTATGAAATTATATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTTTGGCAGTATAGAGATGCGGATCCTGGTTTCGGATCATCCCAGGCAAAGGAGATGTTGGATCATTTAGAAAGTGTTTTGGCAAACGAACCTGTTGCAGTCAAAAGCGGCCAATTTATCGTAGAAGTGAAACCACAGGGGGTTACCAAAGGCCTTGTGGCTGAAAAGATCTTTTCATCAATGGCAGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGTATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGCATTGTCCAGTAACATTCTTTCTCCAACAACGTCGGTTTTTGCCTGCACTGTTGGACAAAAACCAAGCAAAGCCAAATATTATTTAGATGACACAGCCGAAGTAATAAGCATGCTTGAGTACCTGGCTGAAGCTTCTAGTCCATTACCATCCTCTGATGATGAAGAAGGTGAAAATGCTTCTTGA 2571 41.93 MISRSYTNLLDLASGNFPAMEVKKKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEILYVGSLKVDIQPEEQDEVSQILLEKFRCIPAFLPPHILENFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTSQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVEKTAEALNEAISMADSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRAESRAILLDYDGTVMPQNSINKSPSAQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMHIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSSNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS* 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3465683 3473151 + CsaV3_7G005770.1 Csa07g00478 536041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00478 856 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Csa07g00478 856 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 796 IPR006379 -
Csa07g00478 856 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Csa07g00478 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Csa07g00478 856 Gene3D Glycogen Phosphorylase B; 314 527 - -
Csa07g00478 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 850 IPR001830 GO:0003824|GO:0005992
Csa07g00478 856 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 850 - -
Csa07g00478 856 TIGRFAM T6PP: trehalose-phosphatase 588 838 IPR003337 GO:0003824|GO:0005992
Csa07g00478 856 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0003824|GO:0005992
Csa07g00478 856 CDD HAD_TPP 591 830 - -
Csa07g00478 856 Gene3D - 718 850 IPR023214 -
Csa07g00478 856 Gene3D - 589 691 IPR023214 -
Csa07g00478 856 Gene3D Glycogen Phosphorylase B; 53 313 - -
Csa07g00478 856 SUPERFAMILY HAD-like 590 838 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02256 Csa-Chr4:23161353 Csa07g00478 Csa-Chr7:3465683 6.34E-139 dispersed
Csa03g00151 Csa-Chr3:1167633 Csa07g00478 Csa-Chr7:3465683 0 transposed
Csa06g03720 Csa-Chr6:29732744 Csa07g00478 Csa-Chr7:3465683 0 transposed
Csa01g02281 Csa-Chr1:19948842 Csa07g00478 Csa-Chr7:3465683 1.30E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00478 K16055 - csv:101209914 1727.22