Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00482 ATGGTTGCCAACCAAAAATCCCTTCCTTCTCTTTCCAACAACAATGCTAAGGATCTCCATTTCCGTGGCGTTCGTAAGAGGCCTTGGGGTCGATACGCTGCCGAGATCCGTGATCCCACCAAGAAAAGCCGCGTTTGGCTCGGTACCTTCGACACCGCCGAGGAGGCTGCACGTGCTTACGACACTGCCGCCCGTCAGTTTCGTGGCGCCAAGGCTAAAACCAACTTTCCCCTTCCTGACGACTTCATCGACGTTTCTCCTCACAACACCAACCAAAGTCCTAGTCCTACCAGCACCCTCGACTCCTCTTCCTCCTCCACCCATGAGAAAACCCCCTCTCCGGAGATCGCCCGAAGCTACGGCGTTGGAAGAACTTTTCCATTCATTCAACCTCAGTTTTTACATGGGGGCGGCACCGTTCGTCCGCTTTTGTTCACGGACGTTTATGGTAGAGCAGAATTCGTAGCTCATGGTTATCCTATACGGTTCGATCCGGCTACGGTGGATTTGACGTCGAGGTTCACCGGCGGGATCCAGACCGATACGAACTCATCGTCCTTGGTTGACTTCCGACCGGCGAAGGAAATTCTGAATCTCGATCTTAATCTGGCTCCGCCGGTTGATGCTTAA 630 53.49 MVANQKSLPSLSNNNAKDLHFRGVRKRPWGRYAAEIRDPTKKSRVWLGTFDTAEEAARAYDTAARQFRGAKAKTNFPLPDDFIDVSPHNTNQSPSPTSTLDSSSSSTHEKTPSPEIARSYGVGRTFPFIQPQFLHGGGTVRPLLFTDVYGRAEFVAHGYPIRFDPATVDLTSRFTGGIQTDTNSSSLVDFRPAKEILNLDLNLAPPVDA* 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3489549 3491615 + CsaV3_7G005810.1 Csa07g00482 536045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00482 209 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Csa07g00482 209 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Csa07g00482 209 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Csa07g00482 209 MobiDBLite consensus disorder prediction 78 118 - -
Csa07g00482 209 PANTHER ERF DOMAIN PROTEIN 9-RELATED 12 126 - -
Csa07g00482 209 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Csa07g00482 209 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Csa07g00482 209 MobiDBLite consensus disorder prediction 85 113 - -
Csa07g00482 209 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Csa07g00482 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 126 - -
Csa07g00482 209 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Csa07g00482 209 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g02395 Csa07g00482 CCT
Csa06g02395 Csa07g00482 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01252 Csa-Chr1:7778515 Csa07g00482 Csa-Chr7:3489549 7.53E-41 dispersed
Csa04g02321 Csa-Chr4:23698717 Csa07g00482 Csa-Chr7:3489549 3.73E-38 dispersed
Csa07g00482 Csa-Chr7:3489549 Csa07g00764 Csa-Chr7:5367835 4.42E-26 dispersed
Csa07g00994 Csa-Chr7:9077209 Csa07g00482 Csa-Chr7:3489549 4.91E-26 dispersed
Csa07g00482 Csa-Chr7:3489549 Csa06g03646 Csa-Chr6:29349705 1.59E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32276 PF00847 AP2 2.20E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00482 K09286 - csv:101210659 395.201