Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00483 ATGAAGCGTTATGTTTACATCAACGACAATGAACCATCAAATGATCTTTATTGCGATAACCGCATTTCGAATAGGAAATACACATTGTTGAACTTTCTCCCAAAAAATTTATGGGAACAGTTCAGCCGCTTCATGAACCAATATTTTTTGTTAATTGCATGCCTACAGTTGTGGCCACTTATAACTCCAGTAAATCCTGCCAGTACATGGGGTCCACTTATCTTCATTTTTGCCGTGTCCGCAACAAAAGAGGCATGGGATGATTATAATAGATATTTGTCAGACAAAAAAGCAAATGAGAAAGAAGTTTGGGTTGTGAAGCAGGGTACCAGAAAAATTATTCAAGCACAAGATATTCATGTTGGTAATTTGGTATGGCTCAGGGAGAATGATGAAGTGCCTTCTGATCTTGTTTTGATTGGTACATCTGATCCTCAAGGAATTTGCTATATAGAGACATCTGCCCTTGATGGAGAAACTGACTTGAAGACAAGGGTCATACCCTCAGCGTGCATGGGAATCGATTTTGATCTGTTAAACAAGATCAAGGGAGTTATCGAGTGTCCTAAACCAGATAAGGATATTAGAAGATTTGATGCAAACATTCGTTTATTTCCTCCTTTTATCGACAATGATGTGTGTCCTTTAACAATAAAAAACACAATTCTTCAGTCATGTTACTTGCGGAACACAGATTGGGTCTGTGGAGTGGCTGTCTACACAGGCAATGAAACCAAGCTTGGGATGAGCAGGGGTGTCCCAGAACCAAAACTTACAGCTATGGATGCAATGATCGACAAGTTAACTGGTGCTATATTTGTTTTTCAACTTGTGGTGGTGGTTGTTCTGGGTATAGCTGGCAATGTTTGGAAGGATTCTGAAGCTCGAAAGCTATGGTATGTGCAACATCCAGAGGAAGGCCCATGGTATGAGCTTTTGGTCATCCCTCTTCGGTTTGAGCTTCTTTGTTCAATCATGATACCTATTTCCATTAAGGTATCTCTGGATCTTGTTAAGAGCTTGTATGCAAAATTTATCGATTGGGACTATGAAATGATTGACTGTGAGAGTGGTATTCCTTCCCATGCTACGAATACAGCAATAAGTGAGGACCTGGGTCAAGTTGAGTACATTTTGACAGATAAAACCGGTACTCTCACTGAAAATAAGATGATCTTCAGGAGATGTTGTATCAATGGCATTTTTTATGGAAATGAAAATGGAGATGCCTTGAAAGATAAAAAACTAGTCAATGCCATTGCAAACAGCTCTCCGGATGTTTTAAGATTTCTCACAATTATGGCAATATGTAATACAGTGGTGCCTACAAAAAGCAAAAGTGGAAATATCTTGTACAAGGCACAGTCACAGGATGAGGATGCTCTTGTGAATGCTGCTGCTTATTTGCATATGGTATTTGTCAATAAGAGTGCTACTATTCTTGAAATTCAGTTTAATGGAATGCTGAATAGATATGAGCTCCTAGATACTCTGGAATTCACATCTGAACGGAAAAGAATGTCTGTGGTTGTTAAAGATTGTCAGAATGGGAAGATTGTTCTCATGTCTAAAGGAGCAGATGAAGCTATACTTCCTTATGCTTATGCTGGCCAGCAAACAAGAACATTTATTGAAGCCGTGGATCAATATGCACAACTTGGTCTCCGCACATTATGTTTGGCTTGGCGTGAACTAGAGGAAGATGAGTATCGAGAATGGGCTTTTATGTTTAAGGAGGCTAATAGCACACTGGTTGACAGGGAGTGGAGGTTAGCTGAAGTTTGTCAAAGATTAGAGCGAAACTTTGAAGTCCTTGGAGTTACTGCTATAGAAGATAGGCTACAGGATGGCGTCCCCGAAACAATTGAAACATTGAGAAGAGCAGGGATAAATTTCTGGATGCTGACTGGAGACAAGCAGAACACTGCCATTCAGATAGCTCTTTTATGCAACTTTATTTCACCAGAGCCCAAAGGACAGTTATTGTTAATAGATGGAAAAACAGAGGATGAAGTTTGCAGAAGTTTGGAGAGAGTTGTTCTAACTATGAAGACCACAACCTCAGAACCCAAGGATGTTGCTTTCGTTGTTGATGGCTGGGCTCTTGAAATTGCTCTCAAGAATTATCGTAGGGCTTTCACTGAATTAGCAATACTATCAAGAACAGCAATATGTTGTCGTGTGACTCCATCACAGAAGGCTCAGCTTGTGGAACTCTTAAAATCGTGTGATTATAGAACATTGGCAATTGGAGATGGTGGGAATGATGTGAGGATGATACAGCAAGCTGATATTGGAGTTGGCATTAGTGGAAGAGAAGGACTGCAGGCAGCCAGGGCAGCTGATTATAGTATTGGAAAGTTCAGGTTTCTGAAAAGATTGATTCTAGTTCATGGACGATACTCATACAACCGTACAGCATTCTTGTCACAATATTCATTCTATAAATCCTTATTGATATGTTTTATCCAGATCTCTTTCTCTTTCATATCAGGTGTCTCTGGGACCAGTCTCTTTAATTCTGTTAGCCTGATGGCTTACAATGTTTTCTATACTAGTATTCCTGTATTAGTTAGCGTTCTTGACAAAGATCTCAGTGAAGAAACGGTGATGCAACATCCTCAGATTTTGTTTTATTGCCAAGCTGGGAGGATTTTAAATCCCAGCACATTTGCTGGATGGTTTGGTCGATCTCTATTTCATGCTGTTGTCGTGTTTGTAATTAGCATACATGCCTACGCTAATGAAAAGAGTGAAATGGTGGAAGTCTCAATGGTGGCACTATCTGGGTGCATTTGGTTACAAGCTTTTGTAGTGACTTTGGAGACCAATTCATTCACAATATTGCAGCATCTTGCCATATGGGGGAATTTAGCTGCATTTTACGTAATTAATTGGATCTTCAGCGCCATTCCTTCATCGGGGATGTATACAATAATGTTTCGCTTATGCGGACAACCTTCTTATTGGATAACCATATTTCTAATAGTAGGAGTTGGAATGGGGCCACTTTTAGCAATCAAATACTTCAGATATACATACAGACCAAGCAAAATCAACACACTTCAACAAGCTGAACGTTTGGGTGGGCCGATTCTGTCGCTAAAAAACATTGAGCATCAGCCTCGGCCCATTGAGAAAGAAGTTTCTCCAATCTCAATAACTCAGCCCAAAAATAGAAACACAGTTTACGAACCTTTATTATCAGACTCTCCCACTGCCACTCGAAGATCTCTTGCATCTTCTTCCTCCTCCTTTGATTTCTTTCAGACACCACCCCCAAGTAGTTATTCAAGAAATAAGGATAATTAG 3312 39.86 MKRYVYINDNEPSNDLYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKEVWVVKQGTRKIIQAQDIHVGNLVWLRENDEVPSDLVLIGTSDPQGICYIETSALDGETDLKTRVIPSACMGIDFDLLNKIKGVIECPKPDKDIRRFDANIRLFPPFIDNDVCPLTIKNTILQSCYLRNTDWVCGVAVYTGNETKLGMSRGVPEPKLTAMDAMIDKLTGAIFVFQLVVVVVLGIAGNVWKDSEARKLWYVQHPEEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDYEMIDCESGIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCINGIFYGNENGDALKDKKLVNAIANSSPDVLRFLTIMAICNTVVPTKSKSGNILYKAQSQDEDALVNAAAYLHMVFVNKSATILEIQFNGMLNRYELLDTLEFTSERKRMSVVVKDCQNGKIVLMSKGADEAILPYAYAGQQTRTFIEAVDQYAQLGLRTLCLAWRELEEDEYREWAFMFKEANSTLVDREWRLAEVCQRLERNFEVLGVTAIEDRLQDGVPETIETLRRAGINFWMLTGDKQNTAIQIALLCNFISPEPKGQLLLIDGKTEDEVCRSLERVVLTMKTTTSEPKDVAFVVDGWALEIALKNYRRAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQISFSFISGVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEETVMQHPQILFYCQAGRILNPSTFAGWFGRSLFHAVVVFVISIHAYANEKSEMVEVSMVALSGCIWLQAFVVTLETNSFTILQHLAIWGNLAAFYVINWIFSAIPSSGMYTIMFRLCGQPSYWITIFLIVGVGMGPLLAIKYFRYTYRPSKINTLQQAERLGGPILSLKNIEHQPRPIEKEVSPISITQPKNRNTVYEPLLSDSPTATRRSLASSSSSFDFFQTPPPSSYSRNKDN* 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3494288 3504836 + CsaV3_7G005820.1 Csa07g00483 536046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00483 1103 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 385 1100 - -
Csa07g00483 1103 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 12 330 - -
Csa07g00483 1103 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 834 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa07g00483 1103 Gene3D - 445 582 IPR023299 GO:0000166
Csa07g00483 1103 Gene3D - 602 790 IPR023214 -
Csa07g00483 1103 SUPERFAMILY Calcium ATPase, transduction domain A 100 248 IPR008250 -
Csa07g00483 1103 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Csa07g00483 1103 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Csa07g00483 1103 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Csa07g00483 1103 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Csa07g00483 1103 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Csa07g00483 1103 SFLD p-type atpase 362 801 IPR044492 -
Csa07g00483 1103 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 1016 IPR023298 -
Csa07g00483 1103 SUPERFAMILY HAD-like 374 805 IPR036412 -
Csa07g00483 1103 Gene3D - 75 251 - -
Csa07g00483 1103 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 573 IPR023299 GO:0000166
Csa07g00483 1103 Pfam Cation transport ATPase (P-type) 436 532 - -
Csa07g00483 1103 Pfam E1-E2 ATPase 99 293 - -
Csa07g00483 1103 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 417 1023 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Csa07g00483 1103 MobiDBLite consensus disorder prediction 1060 1103 - -
Csa07g00483 1103 Pfam Phospholipid-translocating P-type ATPase C-terminal 778 1017 IPR032630 -
Csa07g00483 1103 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Csa07g00483 1103 SFLD Haloacid Dehalogenase 362 801 - -
Csa07g00483 1103 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 385 1100 - -
Csa07g00483 1103 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 12 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00483 Csa-Chr7:3494288 Csa07g02379 Csa-Chr7:21930097 5.84E-159 dispersed
Csa07g00483 Csa-Chr7:3494288 Csa01g00638 Csa-Chr1:4052892 3.81E-179 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00483 K01530 - csv:101210900 2149.78