Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa07g00484 | ATGAGCAGTAGTGTTTGTGCTGATCACCAACACAACAAATCCCCTTTCTCTTCTTTTCAATCTTCTTCTTCTTCTTCTTCCTGTTCTTCCTCTTTTCTTCACCACATTAACCTTCCCCCTACGAAGAACCACCTTGAAATGTCTTCTGATTCACCCCGCTTTTCCTATGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCTTTTAATGGTGAGGATGAATTAGAGGAAGATGGGGATCCCTATTCTTCAGATCATTTTCGGATGTATGAGTTTAAGGTAAGGCGGTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCCTTTGCTCATCCTGGAGAGAAGGCACGACGTCGTGATCCTCGTCGCTTTCATTACTCTGGTACCATGTGTCCGGAGTTTCGTCGCGGCGGTTGTGGTCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAGTGTTGGCTTCATCCGGCCAGGTATCGGACTGAAGCTTGTAAAGATGGAAAGAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCACCTCGTGAGCTTCGTCTTTTGCCTCCTGTCAGCAATTTCCAAACCGGTTCTTGTTCTTCGCCCAATAATAAACGAAGTTCTTCTTCGCTTAGATCTCCCTCTACTGCCTCTGCTTCTAATCACTGCTGTTTGTTTTGTCATTGCGGTGGAGCCGCCGTTACTTCCTCACCGACTTCTACGCTTTTCGGAATGTCTCACCTATCTCCGCCGCACTCTCCCCCGCACTCGCCGGGAAAACCTATAAACGGATTTTCCCCGATTTCCAGGTACAATCCTGATCAGTCTAAGTTAAACGGAGTTTTGAGCTATAAAGATGCACTGACTGAGCTCATGAGCTCAATCGAATCTATGAATATGGATGACGCCAATGCAACTTTAGCCGCCGCCGCCGCCGCGGCTTCCGGTCCAAGACAAACAATCCCTTGGATCGATGTTTCCTCTCTCAACAATGAAGATCAACTGCAGTTCGTTCTCTCACCTTCTACTCCAAATGTCTCCACCGCGTCAGTGAAATTTTCCGTTGAAAACAATAATAATAATGGATGGGCCTCCGCGTACGCCTCGGCCTCCACCTCTGCCTCCGATCCAGATCTGGGATGGGTTAATGATCTGCTGATGTAA | 1167 | 47.04 | MSSSVCADHQHNKSPFSSFQSSSSSSSCSSSFLHHINLPPTKNHLEMSSDSPRFSYAVESLLQKFLPFNGEDELEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQTGSCSSPNNKRSSSSLRSPSTASASNHCCLFCHCGGAAVTSSPTSTLFGMSHLSPPHSPPHSPGKPINGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNMDDANATLAAAAAAASGPRQTIPWIDVSSLNNEDQLQFVLSPSTPNVSTASVKFSVENNNNNGWASAYASASTSASDPDLGWVNDLLM* | 389 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3508522 | 3510664 | - | CsaV3_7G005830.1 | Csa07g00484 | 536047 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa07g00484 | 388 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 | 36 | 387 | - | - | |
| Csa07g00484 | 388 | Gene3D | - | 125 | 188 | - | - | |
| Csa07g00484 | 388 | ProSiteProfiles | Zinc finger C3H1-type profile. | 126 | 152 | IPR000571 | GO:0046872 | |
| Csa07g00484 | 388 | MobiDBLite | consensus disorder prediction | 247 | 271 | - | - | |
| Csa07g00484 | 388 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Csa07g00484 | 388 | MobiDBLite | consensus disorder prediction | 195 | 214 | - | - | |
| Csa07g00484 | 388 | PANTHER | UNKEMPT FAMILY MEMBER | 36 | 387 | IPR045234 | - | |
| Csa07g00484 | 388 | SMART | c3hfinal6 | 160 | 183 | IPR000571 | GO:0046872 | |
| Csa07g00484 | 388 | SMART | c3hfinal6 | 125 | 151 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa04g02516 | Csa-Chr4:24989859 | Csa07g00484 | Csa-Chr7:3508522 | 1.48E-58 | dispersed | |
| Csa05g00823 | Csa-Chr5:6068842 | Csa07g00484 | Csa-Chr7:3508522 | 2.39E-42 | dispersed | |
| Csa06g01420 | Csa-Chr6:12114956 | Csa07g00484 | Csa-Chr7:3508522 | 5.41E-46 | dispersed | |
| Csa07g00484 | Csa-Chr7:3508522 | Csa01g02890 | Csa-Chr1:25366330 | 1.42E-67 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 32277 | None | None | None | None | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa07g00484 | K23047 | - | csv:101211149 | 719.924 |