Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00485 ATGACAACCGGAAGAGAAATTCTCCACAAGATGAAGGTGAAGGCAGGGTTTTGTAGTTCATCGGCAGCGGATACAGGAGGGAAAGGGAAAGGGAAAGTGACGACGGCAAAGATTAATAATAATGTAAGTTATGGGAGTTATTTGGTGAAGGGAAAAGCCAAACATCCAATGGAAGATTATTTAGTCACCGATTTCAAGAGAGTCAACGAACATGATTTGGGTCTGTTTGCTATTTTTGATGGACATCTGGGACATGATGTTGCTAATTTCTTGCAGAACAATCTCTTTGATAACATCCTTAAACAGGGTGATTTGTGGAGCGAAACAAGAAAGGCAATAAAAAGAGCATACAAGAAAACAGACGAAGAGATATTGGATAAAGTGAAGCAACTTGGAAAAGGAGGATCAACGGCTGTGACTGCCATCTTGATCGACGCTCATAAACTGGTGGTTGCCAACGTCGGAGATTCTAGAGCTGTTTTGTGCAAAAACGGCGTCGCTTACCAACTTTCCGTTGACCATGAACCCAGTAAAGAGAAAAGAGACATCGAAAGCCGTGGTGGTTTTGTATCAAATCTTCCAGGCGATGTTCCTCGTGTCGATGGTCAATTGGCAGTTGCCAGAGCATTTGGCGATAAGAGCTTGAAAATCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAACGGTTGACGAAACTACGGAGTTCATGATTTTGGCCAGCGACGGCATATGGAAGGTCATCACAAATCAAGAAGCGGTAGAATCAATTAGACATGTAAAGGATGCGACCTTAGCAGCCAAACGACTTATCGACGAAGCAATTTCTAGGAAAAGCACGGATGACATATCGTGCATTGTTGTTAGGTTTCGATGA 876 43.26 MTTGREILHKMKVKAGFCSSSAADTGGKGKGKVTTAKINNNVSYGSYLVKGKAKHPMEDYLVTDFKRVNEHDLGLFAIFDGHLGHDVANFLQNNLFDNILKQGDLWSETRKAIKRAYKKTDEEILDKVKQLGKGGSTAVTAILIDAHKLVVANVGDSRAVLCKNGVAYQLSVDHEPSKEKRDIESRGGFVSNLPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVEVKTVDETTEFMILASDGIWKVITNQEAVESIRHVKDATLAAKRLIDEAISRKSTDDISCIVVRFR* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3515190 3517206 - CsaV3_7G005840.1 Csa07g00485 536048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00485 291 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 3 290 - -
Csa07g00485 291 PANTHER PROTEIN PHOSPHATASE 2C 3 290 IPR015655 GO:0004722|GO:0006470
Csa07g00485 291 SUPERFAMILY PP2C-like 33 290 IPR036457 -
Csa07g00485 291 Pfam Protein phosphatase 2C 52 283 IPR001932 -
Csa07g00485 291 SMART PP2C_4 39 288 IPR001932 -
Csa07g00485 291 CDD PP2Cc 42 290 IPR001932 -
Csa07g00485 291 Gene3D - 27 291 IPR036457 -
Csa07g00485 291 ProSiteProfiles PPM-type phosphatase domain profile. 43 290 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01050 Csa-Chr2:10191814 Csa07g00485 Csa-Chr7:3515190 7.79E-35 dispersed
Csa04g02331 Csa-Chr4:23784845 Csa07g00485 Csa-Chr7:3515190 7.55E-131 dispersed
Csa06g01923 Csa-Chr6:17350468 Csa07g00485 Csa-Chr7:3515190 1.07E-62 dispersed
Csa06g03854 Csa-Chr6:30575645 Csa07g00485 Csa-Chr7:3515190 9.80E-110 dispersed
Csa07g00485 Csa-Chr7:3515190 Csa03g02203 Csa-Chr3:19119262 1.67E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00485 K17506 - csv:101211399 562.762