Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00489 ATGGAAGATTCCTCACACCAATCATCGGTGTTTCAGAAGATATGTGGCCATTCTTACCTCACTTCTAGACTTTCCCCTAACCTTCACTCCACACGGTTGACCGGTGTATTTGCTAATGGGGTTTTGGAGAATCCCTTGAAGACAGCTTATCATGGGACTGGCTTGGCTGGAGTTTCACCCACTTCTCCTTTTCTTGTACAAGCTCCTTCTGAGAAAGGTGCAGCTGGATTTGCTGTGGATTTTCTTATGGGAGGAGTATCTGCTGCTGTTTCTAAAACAGCTGCTGCTCCAATTGAGCGTGTCAAATTGCTGATCCAAAATCAGGACGAGATGCTCAAAACTGGTAGGCTATCTGAGCCATACAAAGGAATCACCGACTGCTTTGCCCGAACAATTAAAGATGAAGGAGTCATAGCTCTATGGAGGGGAAACACTGCAAATGTTATCAGATACTTCCCCACACAAGCTTTGAATTTTGCCTTCAAGGATTACTTCAAGAGGCTGTTCAACTTCAAGAAAGACAGAGATGGTTACTGGAAATGGTTTGCTGGGAATTTGGCCTCTGGTGGTGCTGCTGGTGCTTCATCTCTTTTATTTGTTTATTCCCTCGATTATGCTAGAACTCGTCTGGCCAATGATGCCAAGGCTGCAAAAAAGGGTGGTGAGAGGCAGTTTAATGGTCTTGTTGACGTCTACAAGAAAACCCTTAAATCTGATGGCATTGCTGGGCTGTATCGTGGATTTAACATCTCTTGTGTTGGAATTATTGTGTACCGTGGTCTTTACTTTGGAATGTATGATTCAATGAAGCCCGTGGTTTTGGTTGGCGATTTGCAGGATAGTTTCCTTGCTAGTTTCTTGCTTGGTTGGTGTATCACGATAGGAGCTGGTTTGGCTTCTTACCCAATCGATACTGTCCGCAGAAGAATGATGATGACCTCAGGCGAAGCAGTCAAATATAATAGCTCATTGGATGCATTCAAACAGATCGTTAAGAATGAGGGAACCAAATCTCTCTTCAAGGGTGCTGGGGCAAACATTCTGCGTGCTGTTGCCGGTGCTGGTGTGTTGGCTGGGTATGACAAACTTCAGCTCCTCGTTCTTGGCAAGAAATATGGTTCCGGTGGTGGTGGTTAA 1137 44.94 MEDSSHQSSVFQKICGHSYLTSRLSPNLHSTRLTGVFANGVLENPLKTAYHGTGLAGVSPTSPFLVQAPSEKGAAGFAVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKTGRLSEPYKGITDCFARTIKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSMKPVVLVGDLQDSFLASFLLGWCITIGAGLASYPIDTVRRRMMMTSGEAVKYNSSLDAFKQIVKNEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLLVLGKKYGSGGGG* 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3541649 3545062 + CsaV3_7G005880.1 Csa07g00489 536052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00489 378 PRINTS Adenine nucleotide translocator signature 77 89 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa07g00489 378 PRINTS Adenine nucleotide translocator signature 121 142 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa07g00489 378 PRINTS Adenine nucleotide translocator signature 154 166 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa07g00489 378 PRINTS Adenine nucleotide translocator signature 180 193 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa07g00489 378 PRINTS Adenine nucleotide translocator signature 285 301 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa07g00489 378 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 25 377 - -
Csa07g00489 378 PRINTS Mitochondrial carrier protein signature 80 93 IPR002067 GO:0055085
Csa07g00489 378 PRINTS Mitochondrial carrier protein signature 93 107 IPR002067 GO:0055085
Csa07g00489 378 PRINTS Mitochondrial carrier protein signature 143 163 IPR002067 GO:0055085
Csa07g00489 378 PRINTS Mitochondrial carrier protein signature 195 213 IPR002067 GO:0055085
Csa07g00489 378 PRINTS Mitochondrial carrier protein signature 245 263 IPR002067 GO:0055085
Csa07g00489 378 PRINTS Mitochondrial carrier protein signature 289 311 IPR002067 GO:0055085
Csa07g00489 378 SUPERFAMILY Mitochondrial carrier 76 362 IPR023395 -
Csa07g00489 378 Pfam Mitochondrial carrier protein 76 172 IPR018108 -
Csa07g00489 378 Pfam Mitochondrial carrier protein 179 272 IPR018108 -
Csa07g00489 378 Pfam Mitochondrial carrier protein 281 367 IPR018108 -
Csa07g00489 378 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 25 377 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Csa07g00489 378 ProSiteProfiles Solute carrier (Solcar) repeat profile. 180 272 IPR018108 -
Csa07g00489 378 Gene3D Mitochondrial carrier domain 78 373 IPR023395 -
Csa07g00489 378 ProSiteProfiles Solute carrier (Solcar) repeat profile. 75 168 IPR018108 -
Csa07g00489 378 ProSiteProfiles Solute carrier (Solcar) repeat profile. 284 366 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01833 Csa-Chr2:17552557 Csa07g00489 Csa-Chr7:3541649 3.46E-61 dispersed
Csa02g01936 Csa-Chr2:18165384 Csa07g00489 Csa-Chr7:3541649 0 dispersed
Csa02g01937 Csa-Chr2:18170328 Csa07g00489 Csa-Chr7:3541649 0 dispersed
Csa07g00489 Csa-Chr7:3541649 Csa01g02909 Csa-Chr1:25517202 4.42E-32 dispersed
Csa07g00489 Csa-Chr7:3541649 Csa02g01828 Csa-Chr2:17535391 4.82E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00489 K05863 - csv:101212128 710.294