Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00490 ATGGCTCCATTTTCATTCTCATTCTTGTTCTTATTACTCCTTCAGTCATCTTTTCTGTTCAAAAGTCTAACCGCCAAACACCACGACGACCACCACCACCACCGTGTCCGGTCACCAAACTCGAACCCAAGACTTCATCAAGCATTCCTTGCTCTGCAAGCATGGAAAAGAGTCATTTACTCAGACCCAAAAAACCACACCACCAATTGGGTGGGGCCATCAGTTTGCAATTACTTTGGAGTGTACTGTGCTCCATCACTTGATGACCCAAAAATCCAAGTCGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCCTACGAATTGGGCCTTTTAGCAGACCTTGCTCTGCTTCATCTCAATAGTAACAGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTGGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTGTTCTTCACCTTCCAAAATTAAAATATCTTGATCTTCGATTCAACGAATTTGAAGGTTCAATTCCCTCTGAACTCTTCAACAAAACCCTTGACGCCATTTTTATAAACAGCAATCGTTTCACCAACATTATCCCGCGAAACATCGGTGGAAAATCAGCTTCTGTAATTGTTTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCAACCATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCAGGCTGTTTGCCACAAGAAATTGGGTTTTTGTATAAATTGAAGGTATTGGATGTGAGTTTCAACAAACTAATGGGTCCTTTACCCTACAGTTTAACTGGGTTAGCTCAATTAGAGCAATTGAATTTAGCCCATAATATGTTTAGTGGGAATTTATACGAAGGGATCTGTAGCCTTCCGAGTTTGGAGAATGTGACAGTTGCTTACAATTACTTCTGTGAAGAAGTAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGTTTGCCGGAGAAGGCGTTTCAGAGGAGTAAAAAGGAATGTAGTGCGGTGGTTGAGCATCCTGTGGATTGTTTTGAGCATCCGTGCGGAGGGGGCGGAGGAGGTTATGGTTCTAGTATTGCGGCGGTTCCGGGGCCGGCTCCGACGCCTTATTCCGTTGTTGCCCCTTCGCAGTTGTGA 1206 43.45 MAPFSFSFLFLLLLQSSFLFKSLTAKHHDDHHHHRVRSPNSNPRLHQAFLALQAWKRVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPYELGLLADLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPKLKYLDLRFNEFEGSIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLMGPLPYSLTGLAQLEQLNLAHNMFSGNLYEGICSLPSLENVTVAYNYFCEEVGICRNLTAKGIAFDDRRNCLPEKAFQRSKKECSAVVEHPVDCFEHPCGGGGGGYGSSIAAVPGPAPTPYSVVAPSQL* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3545325 3547294 + CsaV3_7G005890.1 Csa07g00490 536053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00490 401 SUPERFAMILY L domain-like 48 323 - -
Csa07g00490 401 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 390 - -
Csa07g00490 401 PANTHER EXTENSIN-LIKE PROTEIN 14 390 - -
Csa07g00490 401 Gene3D Ribonuclease Inhibitor 48 212 IPR032675 -
Csa07g00490 401 Gene3D Ribonuclease Inhibitor 213 344 IPR032675 -
Csa07g00490 401 Pfam Leucine rich repeat 119 176 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00490 - - - csv:101218757 767.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00076 Csa-Chr6:488593 Csa07g00490 Csa-Chr7:3545325 4.93E-119 dispersed
Csa06g00077 Csa-Chr6:492860 Csa07g00490 Csa-Chr7:3545325 2.59E-99 dispersed
Csa07g00490 Csa-Chr7:3545325 Csa02g00136 Csa-Chr2:948141 3.42E-131 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00136 CCT 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 62.7 1.7e-45 181.4
Csa07g00490 . 42 371 Leucine-rich Repeat extension Gene Families AT1G62440 58.2 6.8e-42 169.5
Csa01g02065 CCT 53 220 Leucine-rich Repeat extension Gene Families AT1G62440 70.2 2.2e-40 164.5
Csa06g00076 . 56 225 Leucine-rich Repeat extension Gene Families AT1G62440 52.4 3.3e-36 150.6
Csa02g00136 CCT 40 423 Leucine-rich Repeat extension Gene Families AT4G13340 72.7 2.9e-66 250.4
Csa01g02065 CCT 24 395 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 2.3e-63 240.7
Csa07g00490 . 42 372 Leucine-rich Repeat extension Gene Families AT4G13340 62.7 1.9e-41 167.9
Csa06g00076 . 14 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.2 2.5e-41 167.5
Csa06g00075 . 14 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 1.6e-40 164.9
Csa06g00077 . 14 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 1.6e-40 164.9
Csa06g00073 . 33 227 Leucine-rich Repeat extension Gene Families AT4G13340 56.4 7.5e-38 156.0
Csa02g00136 CCT 47 419 Leucine-rich Repeat extension Gene Families AT3G24480 75.7 1.6e-76 283.9
Csa01g02065 CCT 21 390 Leucine-rich Repeat extension Gene Families AT3G24480 73.9 3.1e-69 259.6
Csa07g00490 . 42 386 Leucine-rich Repeat extension Gene Families AT3G24480 58.4 6.6e-43 172.2
Csa06g00076 . 26 400 Leucine-rich Repeat extension Gene Families AT3G24480 51.9 5.6e-42 169.1
Csa06g00075 . 26 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.7 2.0e-39 160.6
Csa06g00077 . 26 225 Leucine-rich Repeat extension Gene Families AT3G24480 51.7 2.0e-39 160.6
Csa06g00073 . 33 402 Leucine-rich Repeat extension Gene Families AT3G24480 50.5 2.2e-38 157.1
Csa03g01297 . 25 379 Leucine-rich Repeat extension Gene Families AT3G22800 66.1 3.9e-53 206.1
Csa07g00490 . 39 371 Leucine-rich Repeat extension Gene Families AT3G22800 64.4 9.0e-50 194.9
Csa01g02065 CCT 37 395 Leucine-rich Repeat extension Gene Families AT5G25550 62.3 2.3e-39 160.2
Csa02g00136 CCT 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 60.2 1.5e-38 157.5
Csa03g01297 . 37 375 Leucine-rich Repeat extension Gene Families AT5G25550 65.1 2.1e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00490 Csa_Chr07 FPKM 1.039755 0.0 4.003016 3.849837 0.0 1.102224 0.0 2.328474 3.372069 3.650235