Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00490 ATGGCTCCATTTTCATTCTCATTCTTGTTCTTATTACTCCTTCAGTCATCTTTTCTGTTCAAAAGTCTAACCGCCAAACACCACGACGACCACCACCACCACCGTGTCCGGTCACCAAACTCGAACCCAAGACTTCATCAAGCATTCCTTGCTCTGCAAGCATGGAAAAGAGTCATTTACTCAGACCCAAAAAACCACACCACCAATTGGGTGGGGCCATCAGTTTGCAATTACTTTGGAGTGTACTGTGCTCCATCACTTGATGACCCAAAAATCCAAGTCGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCCTACGAATTGGGCCTTTTAGCAGACCTTGCTCTGCTTCATCTCAATAGTAACAGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTCTTTGAATTGGATTTAAGCAACAACAGATTCGTTGGCCCTTTTCCTTCTGTTGTTCTTCACCTTCCAAAATTAAAATATCTTGATCTTCGATTCAACGAATTTGAAGGTTCAATTCCCTCTGAACTCTTCAACAAAACCCTTGACGCCATTTTTATAAACAGCAATCGTTTCACCAACATTATCCCGCGAAACATCGGTGGAAAATCAGCTTCTGTAATTGTTTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCAACCATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTGTTGATCAACACTAGTTTATCAGGCTGTTTGCCACAAGAAATTGGGTTTTTGTATAAATTGAAGGTATTGGATGTGAGTTTCAACAAACTAATGGGTCCTTTACCCTACAGTTTAACTGGGTTAGCTCAATTAGAGCAATTGAATTTAGCCCATAATATGTTTAGTGGGAATTTATACGAAGGGATCTGTAGCCTTCCGAGTTTGGAGAATGTGACAGTTGCTTACAATTACTTCTGTGAAGAAGTAGGGATTTGCCGGAATTTGACGGCGAAAGGGATTGCTTTTGATGATCGGCGGAATTGTTTGCCGGAGAAGGCGTTTCAGAGGAGTAAAAAGGAATGTAGTGCGGTGGTTGAGCATCCTGTGGATTGTTTTGAGCATCCGTGCGGAGGGGGCGGAGGAGGTTATGGTTCTAGTATTGCGGCGGTTCCGGGGCCGGCTCCGACGCCTTATTCCGTTGTTGCCCCTTCGCAGTTGTGA 1206 43.45 MAPFSFSFLFLLLLQSSFLFKSLTAKHHDDHHHHRVRSPNSNPRLHQAFLALQAWKRVIYSDPKNHTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPYELGLLADLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLHLPKLKYLDLRFNEFEGSIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLMGPLPYSLTGLAQLEQLNLAHNMFSGNLYEGICSLPSLENVTVAYNYFCEEVGICRNLTAKGIAFDDRRNCLPEKAFQRSKKECSAVVEHPVDCFEHPCGGGGGGYGSSIAAVPGPAPTPYSVVAPSQL* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3545325 3547294 + CsaV3_7G005890.1 Csa07g00490 536053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00490 401 SUPERFAMILY L domain-like 48 323 - -
Csa07g00490 401 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 390 - -
Csa07g00490 401 PANTHER EXTENSIN-LIKE PROTEIN 14 390 - -
Csa07g00490 401 Gene3D Ribonuclease Inhibitor 48 212 IPR032675 -
Csa07g00490 401 Gene3D Ribonuclease Inhibitor 213 344 IPR032675 -
Csa07g00490 401 Pfam Leucine rich repeat 119 176 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00076 Csa-Chr6:488593 Csa07g00490 Csa-Chr7:3545325 4.93E-119 dispersed
Csa06g00077 Csa-Chr6:492860 Csa07g00490 Csa-Chr7:3545325 2.59E-99 dispersed
Csa07g00490 Csa-Chr7:3545325 Csa02g00136 Csa-Chr2:948141 3.42E-131 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00490 - - csv:101218757 767.303