Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00501 ATGGACAACATTACTGCTCAATTAAAGCGAGGTATCTCCCGCCAATTCTCCACCGGTTCTTTACGCCGTACCTTAAGTCGTCAGTTCACCCGTCAATCCTCTCTTGATCCTAGAAGGAACAATTTGAGATTTAGCTTTGGGAGGCAATCTTCTTTGGACCCTATTCGCCGCTGTCCCGATGAAGATAATGAGCTTTCTATTCCTGACAATTTGGATTCCACCATGCAGCTTCTCTTTATGGCTTGCCGTGGCGATGTTAGAGGTGTTGAGGATTTGCTTAATGATGGTACTGATGTTAATAGTATTGATTTGGATGGCCGTACTGCTTTGCATATTGCTGCCTGTGAAGGTCATGCTGCTGTTGTTAAGCTCTTGCTTAGTCGTAAGGCTAATATTGATGCTCGTGATCGTTGGGGGAGCACGGCAGCTGCAGATGCTAAATATTATGGAAATACAGAGATTTACAATATTCTCAAGGCACGAGGAGCAAAAGTTCCGAAATTTAGGAAAACGCCAATGACTGTTGCAAATCCTAGGGAAGTTCCAGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGAGTGATGGTATATCAAAGGGGGCATATCAAGTTGCCAAATGGAATGGTACAAAAGTCTCTGTAAAGATTCTTGATAAAGATTGTTATTGTAACCCAGATTCTATAAATGCATTCAAACATGAGTTGACATTATTGGAAAAGGTCCGACATCCAAATGTAGTGCAGTTTGTTGGTGCTGTTACCCAGAATTTGCCAATGATGATTGTTTCTGAATATCATCCGAAGGGTGATTTAGGGTGCTATCTTCAAAAGAAAGGTCGTTTATCTCCATCTAAAGCCTTAAGATTTGCCCTCGATGTGGCTAGGGGAATGAACTATCTTCACGAATGCAAACCAGATCCAATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTCAAAGTTGCTGGATTTGGCTTGATAAGATTGTCTAAAATGTCACAGGACAAAGCAAAATTAGCTCACCCAGTTGTTATTGACTATTCAAACTTGTACTTAGCACCCGAAATTTACAACAATGAAATATTTGACAGAAGCGTCGATTCATTTTCATTCGGTCTCATTTTGTACGAGATGGTTGAAGGTATTCAACCATTCCATCCCAAGCCTCCAGAAGAGGTTACCAGAGCTATTTGTGCAGAAGGAAAGAGACCTCCATTTAAGATCAAATCAAAAAGTTATCCACCTGACCTAAAAGAATTGATTGAGGAATGCTGGGATCCCGAACCTGTTATGAGGCCTACTTTCTCCGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACAAGGGTGGTGGAAAGACACATTCAAACTTCCCTGGAAATAA 1422 40.72 MDNITAQLKRGISRQFSTGSLRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDEDNELSIPDNLDSTMQLLFMACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAAVVKLLLSRKANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGISKGAYQVAKWNGTKVSVKILDKDCYCNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDVARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGLIRLSKMSQDKAKLAHPVVIDYSNLYLAPEIYNNEIFDRSVDSFSFGLILYEMVEGIQPFHPKPPEEVTRAICAEGKRPPFKIKSKSYPPDLKELIEECWDPEPVMRPTFSEIIVRLDKIVANCSKQGWWKDTFKLPWK* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3598934 3604148 - CsaV3_7G006000.1 Csa07g00501 536064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00501 473 SMART ANK_2a 105 134 IPR002110 GO:0005515
Csa07g00501 473 SMART ANK_2a 73 101 IPR002110 GO:0005515
Csa07g00501 473 SMART ANK_2a 138 167 IPR002110 GO:0005515
Csa07g00501 473 PIRSF ILK 8 472 - -
Csa07g00501 473 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 471 - -
Csa07g00501 473 Gene3D Transferase(Phosphotransferase) domain 1 269 467 - -
Csa07g00501 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Csa07g00501 473 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Csa07g00501 473 Gene3D Phosphorylase Kinase; domain 1 188 268 - -
Csa07g00501 473 Pfam Protein tyrosine and serine/threonine kinase 201 450 IPR001245 GO:0004672|GO:0006468
Csa07g00501 473 SMART serkin_6 193 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00501 473 SUPERFAMILY Protein kinase-like (PK-like) 200 451 IPR011009 -
Csa07g00501 473 Pfam Ankyrin repeats (3 copies) 80 165 IPR002110 GO:0005515
Csa07g00501 473 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Csa07g00501 473 CDD STKc_MAP3K-like 199 451 - -
Csa07g00501 473 Gene3D - 49 184 IPR036770 -
Csa07g00501 473 SUPERFAMILY Ankyrin repeat 60 176 IPR036770 -
Csa07g00501 473 ProSiteProfiles Protein kinase domain profile. 189 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00501 473 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 33 471 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01376 Csa-Chr6:11696391 Csa07g00501 Csa-Chr7:3598934 1.55E-136 dispersed
Csa06g02508 Csa-Chr6:22324952 Csa07g00501 Csa-Chr7:3598934 1.25E-16 dispersed
Csa06g03735 Csa-Chr6:29804365 Csa07g00501 Csa-Chr7:3598934 2.05E-135 dispersed
Csa07g00501 Csa-Chr7:3598934 Csa03g04499 Csa-Chr3:39171068 8.03E-43 dispersed
Csa07g00501 Csa-Chr7:3598934 Csa01g02286 Csa-Chr1:20011245 7.04E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78469 PF07714 PK_Tyr_Ser-Thr 9.80E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00501 - - csv:101213574 967.222