Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g00504 | ATGGATCAATCGGAGCGTTCTCAGCATCAGCAACAATCACAGCAACCTGCAGGCGGTGTCGGTGCAGGCCAATTACAATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCCGGAACTCCTGCTATTACGATTCCCCCAACTCAACCACCATCCAGTTTCTCCAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAACACTTCCACCACCAGCAACAGCAGCAGCAACAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCATAGTCTCCCTCTTGCTCGAATCAAGAAAATAATGAAAGCAGATGAAGATGTCCGAATGATTTCCGCTGAAGCACCGGTTATATTTGCAAAAGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCACACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCAAGGACAGATGTCTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAACTGAAAGAGGAAGGCCTCGGAATCACAAAAGCCTCCCTTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCAGTGGGTGCTACAGGAATGATAATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACTGCTCAACAGCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACCCAACCTCAGCAACAGCAACAAACTCAGCAGCAAAGTGATGGATAG | 801 | 46.32 | MDQSERSQHQQQSQQPAGGVGAGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQPRPSMPFMPWPHTQPQQQQQTQQQSDG* | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3626972 | 3629714 | + | CsaV3_7G006030.1 | Csa07g00504 | 536067 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g00504 | 266 | Gene3D | Histone, subunit A | 64 | 181 | IPR009072 | GO:0046982 | |
Csa07g00504 | 266 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 9 | 260 | - | - | |
Csa07g00504 | 266 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 9 | 260 | - | - | |
Csa07g00504 | 266 | Pfam | Core histone H2A/H2B/H3/H4 | 56 | 166 | IPR007125 | GO:0003677 | |
Csa07g00504 | 266 | MobiDBLite | consensus disorder prediction | 250 | 266 | - | - | |
Csa07g00504 | 266 | MobiDBLite | consensus disorder prediction | 237 | 266 | - | - | |
Csa07g00504 | 266 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Csa07g00504 | 266 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Csa07g00504 | 266 | SUPERFAMILY | Histone-fold | 59 | 175 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02790 | Csa-Chr1:24577509 | Csa07g00504 | Csa-Chr7:3626972 | 6.56E-77 | dispersed | |
Csa04g00602 | Csa-Chr4:3971972 | Csa07g00504 | Csa-Chr7:3626972 | 4.83E-30 | dispersed | |
Csa06g02481 | Csa-Chr6:22102283 | Csa07g00504 | Csa-Chr7:3626972 | 4.64E-11 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32278 | PF00125 | Histone | 6.10E-18 | CL0012 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g00504 | K08066 | - | csv:101213813 | 421.394 |