Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00504 ATGGATCAATCGGAGCGTTCTCAGCATCAGCAACAATCACAGCAACCTGCAGGCGGTGTCGGTGCAGGCCAATTACAATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCCGGAACTCCTGCTATTACGATTCCCCCAACTCAACCACCATCCAGTTTCTCCAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAACACTTCCACCACCAGCAACAGCAGCAGCAACAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCATAGTCTCCCTCTTGCTCGAATCAAGAAAATAATGAAAGCAGATGAAGATGTCCGAATGATTTCCGCTGAAGCACCGGTTATATTTGCAAAAGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCACACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCAAGGACAGATGTCTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAACTGAAAGAGGAAGGCCTCGGAATCACAAAAGCCTCCCTTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCAGTGGGTGCTACAGGAATGATAATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACTGCTCAACAGCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACCCAACCTCAGCAACAGCAACAAACTCAGCAGCAAAGTGATGGATAG 801 46.32 MDQSERSQHQQQSQQPAGGVGAGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQPRPSMPFMPWPHTQPQQQQQTQQQSDG* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3626972 3629714 + CsaV3_7G006030.1 Csa07g00504 536067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00504 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Csa07g00504 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 260 - -
Csa07g00504 266 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 260 - -
Csa07g00504 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677
Csa07g00504 266 MobiDBLite consensus disorder prediction 250 266 - -
Csa07g00504 266 MobiDBLite consensus disorder prediction 237 266 - -
Csa07g00504 266 MobiDBLite consensus disorder prediction 1 59 - -
Csa07g00504 266 MobiDBLite consensus disorder prediction 1 39 - -
Csa07g00504 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00504 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101213813 421.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02790 Csa-Chr1:24577509 Csa07g00504 Csa-Chr7:3626972 6.56E-77 dispersed
Csa04g00602 Csa-Chr4:3971972 Csa07g00504 Csa-Chr7:3626972 4.83E-30 dispersed
Csa06g02481 Csa-Chr6:22102283 Csa07g00504 Csa-Chr7:3626972 4.64E-11 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00052 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 4.2e-88 321.2
Csa01g02790 . 82 249 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.6e-53 205.7
Csa07g00504 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 7.4e-53 204.1
Csa01g02790 . 1 259 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.8 6.4e-57 217.6
Csa07g00504 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.4e-49 191.0
Csa01g00052 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 6.9e-43 171.0
Csa01g02790 . 23 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 3.1e-61 231.9
Csa07g00504 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.0e-52 202.6
Csa01g00052 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.7e-51 199.5
Csa01g00052 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.4e-38 155.2
Csa01g00052 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 3.4e-80 295.0
Csa01g02790 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 6.3e-50 194.5
Csa07g00504 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.8e-49 193.0
Csa07g00504 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.1e-64 242.3
Csa01g00052 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 3.8e-50 194.9
Csa01g02790 . 54 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 6.6e-50 194.1
Csa06g02035 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 2.4e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32278 PF00125 Histone 6.10E-18 CL0012 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00504 Csa_Chr07 FPKM 14.462043 13.180037 5.740097 5.292675 0.418286 0.316837 0.564843 2.129905 3.121385 2.081015