Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00504 ATGGATCAATCGGAGCGTTCTCAGCATCAGCAACAATCACAGCAACCTGCAGGCGGTGTCGGTGCAGGCCAATTACAATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCCGGAACTCCTGCTATTACGATTCCCCCAACTCAACCACCATCCAGTTTCTCCAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAACACTTCCACCACCAGCAACAGCAGCAGCAACAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCATAGTCTCCCTCTTGCTCGAATCAAGAAAATAATGAAAGCAGATGAAGATGTCCGAATGATTTCCGCTGAAGCACCGGTTATATTTGCAAAAGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCACACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATTGCAGCTGCAATTTCAAGGACAGATGTCTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAACTGAAAGAGGAAGGCCTCGGAATCACAAAAGCCTCCCTTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCAGTGGGTGCTACAGGAATGATAATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACTGCTCAACAGCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACCCAACCTCAGCAACAGCAACAAACTCAGCAGCAAAGTGATGGATAG 801 46.32 MDQSERSQHQQQSQQPAGGVGAGQLQYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASLPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQPRPSMPFMPWPHTQPQQQQQTQQQSDG* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3626972 3629714 + CsaV3_7G006030.1 Csa07g00504 536067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00504 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Csa07g00504 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 260 - -
Csa07g00504 266 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 9 260 - -
Csa07g00504 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677
Csa07g00504 266 MobiDBLite consensus disorder prediction 250 266 - -
Csa07g00504 266 MobiDBLite consensus disorder prediction 237 266 - -
Csa07g00504 266 MobiDBLite consensus disorder prediction 1 59 - -
Csa07g00504 266 MobiDBLite consensus disorder prediction 1 39 - -
Csa07g00504 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02790 Csa-Chr1:24577509 Csa07g00504 Csa-Chr7:3626972 6.56E-77 dispersed
Csa04g00602 Csa-Chr4:3971972 Csa07g00504 Csa-Chr7:3626972 4.83E-30 dispersed
Csa06g02481 Csa-Chr6:22102283 Csa07g00504 Csa-Chr7:3626972 4.64E-11 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32278 PF00125 Histone 6.10E-18 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00504 K08066 - csv:101213813 421.394