Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00507 ATGAGAGGGTTGTTGTATTTAGGTGGGAAACAAGAGGAAGATGAAGAAGAAAGTCTAAGATCAGGAAGAGAACAACAATTGTTTTTGTATAGTACAAACAATAACAATAACAATGAAGAGATCTACTCCAAGGGATTGGAGATTTGGCCTCAACAAAATGTGGAGAACTACATTTCCTTTGGAGTTGTGGGTCCTACTAGGAAGAACTTGATCATCAACGCCTCCGATCATGAGTTCGTTTCCAGATTAGGGTTTTCGATGATGAGAGGAGGATCAGGTGGTGGTGGTGGGATGAATTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTTCTCATTTGAGGTGCAGGACTTGTTGTAAGAGTCGAGGGTTTCAATGCCAAACCCATGTTAAGAGTACTTGGGTTCCGGCTGCTAAGCGACGGGAACGACAACAACAACGTCATCAGATTTTTCAGAACCATCGTCGACAACAATCTCAAGCAAATCAATCAGATCAAACCACTCTCAAAAGACTTGGAGAAAATCAGCCACTTCTTGCAACTCCTACTGTTACTTCAGGGTTACAAGTTGCACATTTTCCAGCTGAATTCAATTCCCCAGCTAATTTCCGGTGTGTAAAAGTCAGTGCCATTGACAACGTTGAAGAACAATTAGCTTATCAAACATCAGTGAACGTTGGTGGCCATATGTTCAAAGGCATTCTTTACGACCACGGTCCCGAAAGCAGTCAAAATATGAGTATCGATATTGGTGGCGAGAGCTCATACTGCCACAGGGGAGAAGACGACAGTCAACTGCTCGATCTCGTGATTGGAGCATCCAACGGGAGCGGGAGAGTTAGCCAATCATCATCATCTGCCCCATTTGTGGAATCTTCACTGTATCCTATCCCAATCAACCACACATACAACAACGCCGGTACGCAATTTTTTCCATCCACAAGAACCTAA 954 43.29 MRGLLYLGGKQEEDEEESLRSGREQQLFLYSTNNNNNNEEIYSKGLEIWPQQNVENYISFGVVGPTRKNLIINASDHEFVSRLGFSMMRGGSGGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQRHQIFQNHRRQQSQANQSDQTTLKRLGENQPLLATPTVTSGLQVAHFPAEFNSPANFRCVKVSAIDNVEEQLAYQTSVNVGGHMFKGILYDHGPESSQNMSIDIGGESSYCHRGEDDSQLLDLVIGASNGSGRVSQSSSSAPFVESSLYPIPINHTYNNAGTQFFPSTRT* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3658819 3660507 + CsaV3_7G006060.1 Csa07g00507 536070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00507 317 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 314 IPR007818 GO:0003700|GO:0006355
Csa07g00507 317 MobiDBLite consensus disorder prediction 152 168 - -
Csa07g00507 317 MobiDBLite consensus disorder prediction 7 22 - -
Csa07g00507 317 MobiDBLite consensus disorder prediction 138 168 - -
Csa07g00507 317 MobiDBLite consensus disorder prediction 1 23 - -
Csa07g00507 317 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 314 - -
Csa07g00507 317 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 193 241 IPR006511 -
Csa07g00507 317 Pfam Domain of unknown function (DUF702) 97 242 - -
Csa07g00507 317 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 99 141 IPR006510 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02103 Csa-Chr2:19139683 Csa07g00507 Csa-Chr7:3658819 1.66E-65 dispersed
Csa04g00536 Csa-Chr4:3546817 Csa07g00507 Csa-Chr7:3658819 6.86E-47 dispersed
Csa06g03294 Csa-Chr6:27622500 Csa07g00507 Csa-Chr7:3658819 3.84E-63 dispersed
Csa07g00507 Csa-Chr7:3658819 Csa03g04251 Csa-Chr3:37243313 4.57E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32279 PF05142 DUF702 4.30E-62 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00507 - - csv:101220654 605.134