Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00510 ATGGCAGATGGTGAAGATATTCAACCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCTGTGTTTCCTAGTATCGTTGGTAGACCACGTCATACTGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGTGATGAAGCTCAGTCAAAAAGAGGTATTCTTACATTGAAATACCCAATTGAACATGGAATTGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACCTTCTACAATGAGCTTCGTGTTGCACCTGAAGAGCATCCGGTACTTCTTACTGAAGCACCACTTAACCCAAAGGCAAACAGGGAGAAGATGACTCAGATCATGTTTGAAACCTTTGATGTACCTGCCATGTATGTTGCAATCCAGGCTGTTTTATCTCTCTATGCCAGTGGTCGGACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGTCACACAGTGCCCATATACGAGGGGTTTTCACTCCCTCATGCTATCCTACGTCTCGACCTTGCTGGTCGTGATTTGACTGATGCTTTGATGAAAATCCTTACCGAAAGAGGTTACATGTTCACAACAACGGCAGAACGGGAAATTGTCCGTGATGTGAAGGAGAAACTTGCATATGTGGCCCTTGATTACGAGCAAGAACTGGAAACTGCCAGGACTAGTTCAGCCATTGAGAAAAGCTATGAACTACCCGACGGGCAGGTGATTACGATCGGAGCTGAGAGATTCCGTTGCCCAGAAGTGTTGTTCCAACCGTCTCTGATTGGGATGGAATCTTCTGGAATTCATGAAACCACTTACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACTTATATGGTAACATCGTCCTCAGTGGCGGTACAACAATGTTCCCAGGCATTGCTGATCGTATGAGCAAAGAAATCACAGCTCTCGCTCCCAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCCGAAAGGAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACGAAGGCTGAATACGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTAA 1134 46.03 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESSGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3678055 3681844 + CsaV3_7G006090.1 Csa07g00510 536073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00510 377 SMART actin_3 7 377 IPR004000 -
Csa07g00510 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Csa07g00510 377 Gene3D - 140 340 - -
Csa07g00510 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Csa07g00510 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Csa07g00510 377 PANTHER ACTIN 1 376 IPR004000 -
Csa07g00510 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Csa07g00510 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Csa07g00510 377 PANTHER ACTIN-2-LIKE 1 376 - -
Csa07g00510 377 Gene3D - 10 371 - -
Csa07g00510 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Csa07g00510 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Csa07g00510 377 Pfam Actin 5 377 IPR004000 -
Csa07g00510 377 PRINTS Actin signature 28 37 IPR004000 -
Csa07g00510 377 PRINTS Actin signature 51 62 IPR004000 -
Csa07g00510 377 PRINTS Actin signature 63 85 IPR004000 -
Csa07g00510 377 PRINTS Actin signature 117 130 IPR004000 -
Csa07g00510 377 PRINTS Actin signature 142 161 IPR004000 -
Csa07g00510 377 PRINTS Actin signature 238 254 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00370 Csa-Chr1:2306890 Csa07g00510 Csa-Chr7:3678055 5.82E-93 dispersed
Csa02g00205 Csa-Chr2:1407553 Csa07g00510 Csa-Chr7:3678055 9.20E-51 dispersed
Csa05g02253 Csa-Chr5:25182312 Csa07g00510 Csa-Chr7:3678055 8.97E-72 dispersed
Csa07g02009 Csa-Chr7:19614640 Csa07g00510 Csa-Chr7:3678055 3.19E-66 dispersed
Csa07g00510 Csa-Chr7:3678055 Csa06g02804 Csa-Chr6:24455342 0 transposed
Csa07g00510 Csa-Chr7:3678055 Csa02g01593 Csa-Chr2:15080935 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00510 K10355 - csv:101214459 757.673