Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00530 ATGGGGTTCGTTTTACGGGTTTCTGCTAACGGGGAAGGTGATGCACTAAATGCCTTCAAGCTGAGTCTGGTTGACCCCAATAATGCCTTGGAAAGTTGGAATTCCCTCCTTATGAATCCTTGCACATGGTTTCATATTACATGTGATGGAAATGACAGTGTTGTACGTGTTGATCTCGGTAATGCGAATCTGTCTGGAAAACTGGTTCCACAGCTTGATCAACTCAAAAACTTGCGGTACTTGGAACTCTACAGCAACAACATCAGTGGAACAATTCCAAAACGATTTGGAAATTTGAAAAACTTGGAGAGCTTGGATCTTTATTCTAACAGTTTATCTGGTCCAATACCTGATACTCTGGGCAAACTTACAAAACTAACTACCTTGCGTCTGAACAACAATAGCTTATCAGGAACCATTCCAATGTCTTTAACCACTGTTCCACTTCAACTTCTGGATCTTTCAAATAACCTTCTAACAGGAGTCATCCCTGTCAATGGTTCATTTTCTCTTTTCACACCAATCAGTTTTGCCAATAATCGTCTTCGAAATTCTCCCTCTGCTCCTCCTCCCCAAAGGACAGATACACCACGAACATCTTCAGTTGGAGCAATTGTTGCTGCTGCTTCTTTGTTGGTACTTGTGCCTGCTATTGCATTTACTCTTTGGCGACAAAGAACTCCACAGCAACATTTCTTTGATGTACCTGCTGAAGAAGATCCTGAAATTAACCTGGGGCAGCTAAAAAAATATTCTCTACGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCCACAGAACATTTTAGGCAAAGGTGGATTTGGCAAGGTCTATAAGGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGATTGAAAGAGGAGCGAGCTGAGGTTGGAGAGCTTCAATTTCAGGCTGAAGTAGAGATGATCAGCATGGCTGTCCACCGTAATCTACTCCGTCTTAATGGATTTTGCATGTCACCAACTGAACGATTGCTTGTCTATCCTTATATGGCTAATGGAAGTCTAGCATCATGCTTAAGGGAGCGTAAGCAATCCCAACCACCACTCAACTGGGCAATACGTAAACAAGTTGCTTTAGGGGCTGCACGAGGACTTGAATATTTACATAATCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTATTAGATGATGAATATGTGGCTGTTGTTGGAGATTTTGGGTTGGCTAAACTCATGAACTACAAGGACACTCACGTCACAACTGCTGTTCGTGGAACAATTGGGCATATACCCCCAGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAAACTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTCGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGTTAGCAAAAGATGACGATGTCATGTTGCTTGATTGGGTAAAAGGACTTCTAAATGATAAGAAACTGGCAACGTTGGTCGATCCCGATCTCGGAGGTAATTATGCAGAAGAAGAACTAGAGCAGGTAATTCAAATTGCTGTTCTTTGCACGCAAAGCTCCCCGGTGGAACGACCAAAAATGTCGGAGGTGATGCAAATGCTGGAAGGCAATGGTTTAGCTGAGAGATGGGAGGACTGGCAGAAAGAAGAGAGCTCACGCCAAAACTTCAATAATACGGTTCATTCTTACCCCCGGAGTAGATCTCCCCATTTAGTTGATTCCATTTCTCATCTTCCTCCTGATGAGTTGTCTTCTCCAAGATGA 1773 42.64 MGFVLRVSANGEGDALNAFKLSLVDPNNALESWNSLLMNPCTWFHITCDGNDSVVRVDLGNANLSGKLVPQLDQLKNLRYLELYSNNISGTIPKRFGNLKNLESLDLYSNSLSGPIPDTLGKLTKLTTLRLNNNSLSGTIPMSLTTVPLQLLDLSNNLLTGVIPVNGSFSLFTPISFANNRLRNSPSAPPPQRTDTPRTSSVGAIVAAASLLVLVPAIAFTLWRQRTPQQHFFDVPAEEDPEINLGQLKKYSLRELQVATDYFSPQNILGKGGFGKVYKGRLADGSLVAVKRLKEERAEVGELQFQAEVEMISMAVHRNLLRLNGFCMSPTERLLVYPYMANGSLASCLRERKQSQPPLNWAIRKQVALGAARGLEYLHNHCDPKIIHRDVKAANILLDDEYVAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIPPEYLSSGKSSEKTDVFGYGVMLLELVTGQKAFDLARLAKDDDVMLLDWVKGLLNDKKLATLVDPDLGGNYAEEELEQVIQIAVLCTQSSPVERPKMSEVMQMLEGNGLAERWEDWQKEESSRQNFNNTVHSYPRSRSPHLVDSISHLPPDELSSPR* 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3883580 3891551 - CsaV3_7G006290.1 Csa07g00530 536093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00530 590 Gene3D Transferase(Phosphotransferase) domain 1 340 557 - -
Csa07g00530 590 SUPERFAMILY L domain-like 11 185 - -
Csa07g00530 590 Pfam Protein kinase domain 266 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00530 590 ProSitePatterns Protein kinases ATP-binding region signature. 269 291 IPR017441 GO:0005524
Csa07g00530 590 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 590 - -
Csa07g00530 590 MobiDBLite consensus disorder prediction 553 590 - -
Csa07g00530 590 Pfam Leucine rich repeat 77 136 IPR001611 GO:0005515
Csa07g00530 590 SUPERFAMILY Protein kinase-like (PK-like) 243 538 IPR011009 -
Csa07g00530 590 Gene3D Ribonuclease Inhibitor 9 188 IPR032675 -
Csa07g00530 590 PANTHER BNAA08G11770D PROTEIN 3 590 IPR031048 GO:0004675|GO:0005102|GO:0006468
Csa07g00530 590 SMART serkin_6 263 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00530 590 Pfam Leucine rich repeat N-terminal domain 9 49 IPR013210 -
Csa07g00530 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Csa07g00530 590 Gene3D Phosphorylase Kinase; domain 1 232 339 - -
Csa07g00530 590 ProSiteProfiles Protein kinase domain profile. 263 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03065 Csa-Chr5:30756982 Csa07g00530 Csa-Chr7:3883580 0 dispersed
Csa06g00289 Csa-Chr6:2107583 Csa07g00530 Csa-Chr7:3883580 0 dispersed
Csa06g01402 Csa-Chr6:11983801 Csa07g00530 Csa-Chr7:3883580 3.32E-45 dispersed
Csa07g00530 Csa-Chr7:3883580 Csa05g02551 Csa-Chr5:26917973 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78470 PF00069 Pkinase 7.10E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00530 K13416 - csv:101216386 1129.01