Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00534 ATGAGCGGACGGATCGTGAGTGATGAGGGAACGAGACAGTTGGAGAAGGGAAACGACATGGCGCCACCCTCAAAGGTGGGTGTGCCACCGAGAAAGAACGCGTGGGAAGAGTTTAATTGTGTGGTGAAAGAGACGTTTTTCTCTGATCAGCCTCTTCGCCATTTCAAGGACCAACCCAAGCGCAAGAAGGCTGCTTTGTTTGTACAAGGTCTCTTCCCCGTATTTCAATGGGGAAGAGGATACAACTTGAGTAAGTTCAAAGGAGACCTCATTGCTGGCCTAACCATTGCTAGTCTTTGCATTCCTCAAGACATCGGATACGCCAAACTCGCTAATTTGCCTGCTGAAAATGGACTTTATAGTAGCTTTGTCCCGCCATTGGTATACGCAGTGATGGGGAGCTCAAGGGACATTGCAATAGGCCCCGTTGCTGTCGTATCGCTTTTGCTCGGGACGCTGCTGCAACAAGTATACGATCCAGTGAAACAGTCGGAGCAGTACAAGAGGTTGGCTTTCACGGCAACTTTCTTCGCCGGAGTAACGCAGTTGGCTCTAGGATTCCTCCGGCTGGGATTCTTGATTGACTTTCTGTCGCATGCTGCCATTGTCGGGTTCATGGGCGGCGCCGCCGTGACCATCGCTCTTCAGCAGCTGAAAGGTCTTCTTGGCATATCAAAGTTCACCAAGAAAACTGATATCATATCTGTGATGCGCTCTGTTTGGAGTAATGTGAACCATGGGTGGAACTGGCAGACAATACTCATTGGGGTTTCATTCTTAGCCTTTCTTTTGGCTACAAAATATATTGGCAAGAAATACAAGAAATTGTTCTGGATTCCAGCAATGGCCCCATTAACATCTGTTATACTTTCCACATTTTTTGTGTACATCACAAGAGCAGATAAACATGGAGTTGCGATTGTAAAACACATAGAGAAAGGAATAAATCCCCCATCACTTGATGAGATATTCTTCCATGGAGAAAATCTCACCAAAGGTTTCAAAATTGGAGTTGTTGCGGGTTTGATTGGCCTTACGGAAGCAGTGGCGATTGCAAGAACATTTGCAGATCTAAAAGACTATGAAATTGATGGTAACAAAGAAATGATGGCTCTTGGAACCATGAACATTGCTGGCTCAATGACTTCTTGCTATGTAGCAACAGGGTCGTTCTCTCGGTCGGCGGTGAACTACATGGCCGGCTGCTACACACCGATGTCGAACATCGTCATGGCATGCGTCGTTCTCTTGACATTAGAAGTCATCACACCCCTTTTTAAGTACACCCCTAACGCCATTCTTGCCTCCATTATTATCTGTGCCGTCATCGGCCTCATCGACATCGATGCTGTGATTTTGCTATGGAAGATTGACAAATTCGACTTCATTGCCTGTATGGGAGCTTTCTTGGGCGTCGTGTTTGATTCCGTTGAGATCGGTCTTCTCATTGCTGTTAGTTTGTCATTGTTCAAAATTCTATTGCAAGTAACAAGACCCAGAATTGCGTTGCTTGGAAAGCTCCCAAAGATTCCTATTTTTAGGAACATTTTGCAGTACCCTGGGGCAAAGAAGATTGCTGGAGTTCTGATGGTTAGGGTTGATTCTTCAATATACTTCTCCAATGCTAATTATGTCAAAGAAAGGATATTGAGATGGCTAGCAGATGAAACAGAGAAGCTAGAAGACCAATCTATGCCGATCAAAGTCGTGGTCGTCGACATGTCTCCTGTAAACGATATCGACACGAGCGGCATCCATGCGTTGGAGGGTTTGCACTCTCATTTGCATAAGAAAGAAATTGGCCTTGCACTTGCAAACCCAGGGCCAGTGATCATGGAGAAGCTCGTGGCTGCAGAGTTCGATATGCTCATAGGAGAAGACAACATTTTCCTAAGTGTTAACGAAGCTATTAAGATTTACGCCCCAAATGCTGTTCTTGATCCTTAA 1947 45.51 MSGRIVSDEGTRQLEKGNDMAPPSKVGVPPRKNAWEEFNCVVKETFFSDQPLRHFKDQPKRKKAALFVQGLFPVFQWGRGYNLSKFKGDLIAGLTIASLCIPQDIGYAKLANLPAENGLYSSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLLQQVYDPVKQSEQYKRLAFTATFFAGVTQLALGFLRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGLLGISKFTKKTDIISVMRSVWSNVNHGWNWQTILIGVSFLAFLLATKYIGKKYKKLFWIPAMAPLTSVILSTFFVYITRADKHGVAIVKHIEKGINPPSLDEIFFHGENLTKGFKIGVVAGLIGLTEAVAIARTFADLKDYEIDGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCYTPMSNIVMACVVLLTLEVITPLFKYTPNAILASIIICAVIGLIDIDAVILLWKIDKFDFIACMGAFLGVVFDSVEIGLLIAVSLSLFKILLQVTRPRIALLGKLPKIPIFRNILQYPGAKKIAGVLMVRVDSSIYFSNANYVKERILRWLADETEKLEDQSMPIKVVVVDMSPVNDIDTSGIHALEGLHSHLHKKEIGLALANPGPVIMEKLVAAEFDMLIGEDNIFLSVNEAIKIYAPNAVLDP* 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3923526 3928172 + CsaV3_7G006330.1 Csa07g00534 536097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00534 648 ProSiteProfiles STAS domain profile. 518 640 IPR002645 -
Csa07g00534 648 CDD STAS_SulP_like_sulfate_transporter 519 633 - -
Csa07g00534 648 Gene3D STAS domain 513 643 IPR036513 -
Csa07g00534 648 PANTHER SULFATE TRANSPORTER 24 647 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa07g00534 648 PANTHER SULFATE TRANSPORTER 1.2-LIKE 24 647 - -
Csa07g00534 648 Pfam STAS domain 519 636 IPR002645 -
Csa07g00534 648 TIGRFAM sulP: sulfate permease 73 636 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa07g00534 648 Pfam Sulfate permease family 86 466 IPR011547 GO:0016021
Csa07g00534 648 MobiDBLite consensus disorder prediction 1 28 - -
Csa07g00534 648 SUPERFAMILY SpoIIaa-like 523 640 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01545 Csa-Chr5:18066483 Csa07g00534 Csa-Chr7:3923526 0 dispersed
Csa05g01553 Csa-Chr5:18148308 Csa07g00534 Csa-Chr7:3923526 0 dispersed
Csa07g00534 Csa-Chr7:3923526 Csa07g02223 Csa-Chr7:20908936 0 dispersed
Csa07g00534 Csa-Chr7:3923526 Csa07g01694 Csa-Chr7:17436452 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00534 K17470 - csv:101202746 1274.61