Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00538 ATGCAAACCATCGTCTCAAAATTAACAAGCATATCTCTCCTCTCTTATACTTCTAATCTGATGACAAAACTTATTGGTTTTACGTCAATGCTTCTCCCACTCATGTCGTTTATGATTATTGTGTTGTTATTCACTGTTGTGAACGGTCAAGGCACCCGCATTGGTTTCTACTCCAGCTCTTGCCCTCAAGCTGAGTCCATTGTTGCATCTACTGTACGATCTCATTTTCAATCTGATCCTAAGATTGCTCCAGGTTTATTGAGAATGCACTTCCACGATTGCTTCGTTCGGGGTTGTGATGCCTCTGTGCTCCTTGCTGGCTCTAACAGTGAGAGGACTGCACTACCAAACCTTTCGTTAAATGGGTTCGAAGTGATTGACGATGCTAAATCTCAACTTGAAGCTGCTTGTCCTGGTGTTGTATCTTGCGCTGACATTCTTGCTCTAGCTGCTCGTGACTCAGTAGTTTTGACAAGTGGAATACGTTGGGGAGTGCCCACAGGACGAAGAGATGGGACAATTTCGGTGGCTTCAGAAGCTAACAACTTGCCTGGATTTACAGATTCTATCGAGGCTCAAAAGAAACAATTTACTGATAAAGGTCTCAACACTCAAGACCTTGTCACTCTCGTGGGTGGACACACAATAGGCACAACACAATGCCAATTTTTCAGATACAGACTCTTCAACTTCACAGCAGCAGGCGGTCCAGATCCAACGATGGACCCAGCCTTCGTGACTCAAATGCAGGCATTGTGTCCTCAAAACGGAGACGGAACCCGTAGGGTCGCGCTGGACACGGGCAGCGTCGGTCGGTTTGACACAACCTTCTTCTCAAACTTAAGGAACGGACGTGGGGTTTTGGAGTCGGATCAGAAGCTATGGACTGACGCTTCCACTCGTACTTTTGTACAACGGTATTTGGGTTTGAGAGGCGTTTTGGGTTTGACCTTCAATCTTGAGTTTGGGAAATCTATGGTGAAGATGAGTAACATTGAAGTTAAAACTGGAAATCAAGGAGAAATTCGTAAAGTTTGTTCTGCAGTTAATTAA 1053 44.92 MQTIVSKLTSISLLSYTSNLMTKLIGFTSMLLPLMSFMIIVLLFTVVNGQGTRIGFYSSSCPQAESIVASTVRSHFQSDPKIAPGLLRMHFHDCFVRGCDASVLLAGSNSERTALPNLSLNGFEVIDDAKSQLEAACPGVVSCADILALAARDSVVLTSGIRWGVPTGRRDGTISVASEANNLPGFTDSIEAQKKQFTDKGLNTQDLVTLVGGHTIGTTQCQFFRYRLFNFTAAGGPDPTMDPAFVTQMQALCPQNGDGTRRVALDTGSVGRFDTTFFSNLRNGRGVLESDQKLWTDASTRTFVQRYLGLRGVLGLTFNLEFGKSMVKMSNIEVKTGNQGEIRKVCSAVN* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3952110 3954443 + CsaV3_7G006370.1 Csa07g00538 536101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00538 350 Gene3D - 55 350 - -
Csa07g00538 350 Gene3D Peroxidase, domain 2 184 329 - -
Csa07g00538 350 Pfam Peroxidase 68 307 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 ProSiteProfiles Plant heme peroxidase family profile. 51 350 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PANTHER PEROXIDASE 25-RELATED 39 348 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 CDD secretory_peroxidase 53 349 IPR033905 GO:0004601|GO:0042744
Csa07g00538 350 PANTHER PEROXIDASE 39 348 - -
Csa07g00538 350 ProSitePatterns Peroxidases active site signature. 83 94 IPR019794 GO:0004601
Csa07g00538 350 SUPERFAMILY Heme-dependent peroxidases 53 350 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Haem peroxidase superfamily signature 83 97 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Haem peroxidase superfamily signature 141 158 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Haem peroxidase superfamily signature 159 171 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Haem peroxidase superfamily signature 206 221 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Haem peroxidase superfamily signature 266 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 ProSitePatterns Peroxidases proximal heme-ligand signature. 206 216 IPR019793 -
Csa07g00538 350 PRINTS Plant peroxidase signature 61 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Plant peroxidase signature 85 105 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Plant peroxidase signature 121 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Plant peroxidase signature 140 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Plant peroxidase signature 159 174 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Plant peroxidase signature 205 217 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Plant peroxidase signature 264 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Plant peroxidase signature 280 297 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00538 350 PRINTS Plant peroxidase signature 324 337 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01488 Csa-Chr1:10618560 Csa07g00538 Csa-Chr7:3952110 2.03E-80 dispersed
Csa01g02004 Csa-Chr1:16873513 Csa07g00538 Csa-Chr7:3952110 6.63E-83 dispersed
Csa01g02009 Csa-Chr1:16920108 Csa07g00538 Csa-Chr7:3952110 2.20E-129 dispersed
Csa06g00563 Csa-Chr6:4818821 Csa07g00538 Csa-Chr7:3952110 6.93E-85 dispersed
Csa07g00521 Csa-Chr7:3786980 Csa07g00538 Csa-Chr7:3952110 1.90E-101 dispersed
Csa07g00538 Csa-Chr7:3952110 Csa07g01953 Csa-Chr7:19247809 2.94E-94 dispersed
Csa07g01199 Csa-Chr7:11789238 Csa07g00538 Csa-Chr7:3952110 7.28E-77 dispersed
Csa07g00538 Csa-Chr7:3952110 Csa07g00539 Csa-Chr7:3955029 4.55E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00538 K00430 - csv:101217567 694.501