Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00539 ATGGCGAAAGTTGGTTTCATTTTAATTGTATACGTAGTGGTGGTGTTGCATAGCAACGCTGTGCATGGCCAAGGCACACGCCTTGGCTTTTATCGTGCCACGTGCCCACAAGTCGAATTCATCGTTAGATCCACGGTTCGATCTCATTTTCAATTAGATCCATCGATCGCTCCTGGGTTGTTAAGAATGCATTCACATGATTGCTTCGTCCGAGGGTGTGATGCTTCTGTGCTTCTTGCTGGTCCCAATTCTGAGAGGACGGCTGTGCCTAACCGTGGAAGAAGTTGGGAAGTTCCGACGGGACGAAGAGATGGCAGAGTTTCATTAGTTTCCGAGGTGAAGTTGCCTGGTTTTTCAGATTCCATTGAAGTTCAAAAGGAGAAGTTCAGATCTATGGGGCTCAACACACATGACCTCGTAACTCTCGCAGGTGCCCATACCATTGGTACTGCATCGTGTCGTTTTTTCAGTTATAGACTCTACAACTTCACAACAGTCACTGAAACCGGTGCTGACCCAACTCTTAATCCATCACTCGTCGAACGACTACGAGATGTTTGCCCTGTAGACGGAGATAGCTCAAACAGATTTGAACTCGACATCGATAGTGCAGAAAAGTTTGACGTATCGTTCTACAAAAACTTGAGACAAGGAGGAGGGATCTTAGAGTCGGATCAAATGTTGTGGAACGATGATTCTACTCGCCCTATCATCCAACACTATTTGAGTTTAAAAGGTTTAGTAGGGCGTTCAAGCTTTAAAGTTGAGTTTGGAAGATCGATGGTTAAAATGAGCAATGCACAAGTTAAAACTGGCCTTCTTGGTGAAATTCGAAGGGTTTGCTCTAAGGTTAATAATTGA 861 44.6 MAKVGFILIVYVVVVLHSNAVHGQGTRLGFYRATCPQVEFIVRSTVRSHFQLDPSIAPGLLRMHSHDCFVRGCDASVLLAGPNSERTAVPNRGRSWEVPTGRRDGRVSLVSEVKLPGFSDSIEVQKEKFRSMGLNTHDLVTLAGAHTIGTASCRFFSYRLYNFTTVTETGADPTLNPSLVERLRDVCPVDGDSSNRFELDIDSAEKFDVSFYKNLRQGGGILESDQMLWNDDSTRPIIQHYLSLKGLVGRSSFKVEFGRSMVKMSNAQVKTGLLGEIRRVCSKVNN* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3955029 3956472 - CsaV3_7G006380.1 Csa07g00539 536102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00539 286 Gene3D - 27 92 - -
Csa07g00539 286 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 PRINTS Plant peroxidase signature 259 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 ProSiteProfiles Plant heme peroxidase family profile. 25 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 Gene3D Peroxidase, domain 2 116 264 - -
Csa07g00539 286 PANTHER PEROXIDASE 92 283 - -
Csa07g00539 286 PANTHER PEROXIDASE 6 91 - -
Csa07g00539 286 CDD secretory_peroxidase 27 284 IPR033905 GO:0004601|GO:0042744
Csa07g00539 286 PRINTS Haem peroxidase superfamily signature 200 215 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 PRINTS Haem peroxidase superfamily signature 92 104 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 PRINTS Haem peroxidase superfamily signature 138 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 Gene3D - 93 285 - -
Csa07g00539 286 PANTHER PEROXIDASE 25-RELATED 92 283 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 PANTHER PEROXIDASE 25-RELATED 6 91 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 Pfam Peroxidase 93 242 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 SUPERFAMILY Heme-dependent peroxidases 27 285 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa07g00539 286 ProSitePatterns Peroxidases proximal heme-ligand signature. 138 148 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00539 Csa-Chr7:3955029 Csa07g00521 Csa-Chr7:3786980 8.77E-68 dispersed
Csa07g00538 Csa-Chr7:3952110 Csa07g00539 Csa-Chr7:3955029 4.55E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00539 K00430 - csv:101202985 542.347