Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00551 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTTTAGATATCGAGCAGTTATTGGTAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTACACCAAGTTTCGTATTGCTTCAGAGCCTCCAGATAGACCATCAAGTGGGTCACTTTTTCTTTTTGACCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGCTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGTTGGAGCTGTCGTTGAGACTGATGAGGTTTCAACAAGTTCACAGAAGAGTAGAAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCGACTAGCACTTTGACATCATTTTGTGAAGATGCTGATAATGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTCACCAAAAATGGGAAATGGTCTTCTGGTGAATAAACCAGATGCTGGTCAATCAAATTTTTATTTTCCTCATTCCTCTTCCAACAACGCTGAAGCTTGGTCAACAGTTCCTGCTGTGGATTATGTAACACAAGTCCAAAAAGATGGACTTGGGGGTAACGGTGGTGATACTAGTATGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCATCAATGTACAACTGGTTTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCAATTGAACCTCTGCCTTCTGGAATTGTCTTTGGACAAGAGAATTCAACTCCTGACAAGCTTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTGCTCTGGCAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCGAAAGAGCACGTTGATCATTTTCCAGATTTGTATTCAGTTTGTGACATAGATAGCAGGTTAACTGCGCAGAAATCTCACGATGCAACTTTTGGAAGAGGTCATGAGATGTTTTGTGCTCATCCTGGCAAACAAAATGAGGAGATTTTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATCGTATTCAACTGCGAGGTTGAGTTCTGACAATGATATGTCTAAAGAAGGTACTATCAGCTATTCTCTGACTTTGAAACAATCATTAATGGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGAGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGACTTGGACCACTGTAGAATGTGGTGATATGGTTGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAGCTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACAGTTGCAGATCTGGACACTGAGGTTGTGGTTATAGGGAGGTTTATGGGGAACAATAATGGCACAAACTGCCATTGGTCATGTATGTTTGGGGAAGTTGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCATGCACCACCACATAGTGTTGGGCGAGTCCCCTTTTATGTTACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCGGGCTCTGCGCAAGATGTAAATGTTACCGATATATACAACGCTGGTGCTACAGAAGAATTACGTATGCATTTGCGATTTGAGAGGTTACTGTCTCTTGAACCTTCAGATCCTTCAAATGACCTCTCTGAAAGTGCTTTGGAGAAGCAAAACTTAATCAGAGAGCTTATCACAATAAAGGAAGAAGATGATACTTATGGGGAAGATCCAAATCCTCAGAATGATCAAATTCAGCATCAAAGCAAGGAGTTCCTTTTTGTAAAGCTGATGAAAGAAAAACTGTACTCGTGGCTTATCCACAAAGTTATTGAAGGTGGCAAAGGTCCTAATATATTGGATAGTGAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTCGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCAGGAGTGAGTATCAACTTTCGAGACATTAATGGATGGACTGCTCTTCATTGGGCAGCATTATGTGGCAGGGAGTTGACAGTTGGAACCCTTATAACACTGGATGCTTCTCCTGGACTGATGTCAGATCCTTCTCCAGAAGTTCCTTTGGGCATAGTGCCTGCAGATCTTGCATCTATTAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAGTTCCATATCAATGGCTGAGACAGTACAAGATGGTGTGTCAGACGCTTCAAGGACGAAAGCTGTGCAAACTGTTTCTGAACGAAGGGCCACACCGGTAAATGATGGTTTCATGCCCGGCGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATATATCAGATATTAAGAGTGCAGTCGTTTCAGAGGAAAAAATTATCAGAGTGTGGAACTGATGAATTTGGATCCTCAGATAATAGTATTCTTTCATTTATGAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAACCCAGCTCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGGCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATTGTTTGGTCAGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGCAGTGGTTTGCGAGGCTTCCGATCGGATGCAGTTCCCAAGGATCCACCCGCCTTGATGGCACCACCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCTGAGGGACGAGACCAATACCGTAGGCTTCTTACTGTTGTTCAAAAGTGCCGAGAAACCAAGGGGAGTGCTATGGTTGTTACTACTACTTCAGAAGAGGTAATAGAAGGCGATGACATGATTGATATCGACACCCTGCTGGATGACGATGCTTTGATGTCTATGACATTTGATTGA 3276 42.89 MADRGSYGLAPRLDIEQLLVEAKHRWLRPAEICEILRNYTKFRIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNVGAVVETDEVSTSSQKSRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADNDTYQATSRFHSFPTSPKMGNGLLVNKPDAGQSNFYFPHSSSNNAEAWSTVPAVDYVTQVQKDGLGGNGGDTSMMGSQKTLSSASWEEILHQCTTGFQTVPSHVLTSSIEPLPSGIVFGQENSTPDKLLTSNSAIKEDFGSALAMTSNWQVPFEDNTLSFSKEHVDHFPDLYSVCDIDSRLTAQKSHDATFGRGHEMFCAHPGKQNEEILPNLELQFKEGESYSTARLSSDNDMSKEGTISYSLTLKQSLMDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLTWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTVADLDTEVVVIGRFMGNNNGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVNVTDIYNAGATEELRMHLRFERLLSLEPSDPSNDLSESALEKQNLIRELITIKEEDDTYGEDPNPQNDQIQHQSKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDSEGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAALCGRELTVGTLITLDASPGLMSDPSPEVPLGIVPADLASINGHKGISGFLAEAALTSYVSSISMAETVQDGVSDASRTKAVQTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIYQILRVQSFQRKKLSECGTDEFGSSDNSILSFMKARARKSGLSNNPAHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRSDAVPKDPPALMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSAMVVTTTSEEVIEGDDMIDIDTLLDDDALMSMTFD* 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4030504 4044122 + CsaV3_7G006500.1 Csa07g00551 536114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00551 1091 Gene3D - 914 961 - -
Csa07g00551 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1091 - -
Csa07g00551 1091 Pfam IPT/TIG domain 504 577 IPR002909 -
Csa07g00551 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1091 - -
Csa07g00551 1091 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Csa07g00551 1091 MobiDBLite consensus disorder prediction 147 188 - -
Csa07g00551 1091 Gene3D - 671 856 IPR036770 -
Csa07g00551 1091 SMART iq_5 936 958 IPR000048 GO:0005515
Csa07g00551 1091 SMART iq_5 913 935 IPR000048 GO:0005515
Csa07g00551 1091 Pfam IQ calmodulin-binding motif 939 958 IPR000048 GO:0005515
Csa07g00551 1091 Pfam IQ calmodulin-binding motif 915 934 IPR000048 GO:0005515
Csa07g00551 1091 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Csa07g00551 1091 SUPERFAMILY Ankyrin repeat 689 799 IPR036770 -
Csa07g00551 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 913 964 IPR027417 -
Csa07g00551 1091 SUPERFAMILY E set domains 505 589 IPR014756 -
Csa07g00551 1091 SMART CG_1_2 18 136 IPR005559 GO:0003677
Csa07g00551 1091 ProSiteProfiles IQ motif profile. 937 961 IPR000048 GO:0005515
Csa07g00551 1091 ProSiteProfiles IQ motif profile. 914 943 IPR000048 GO:0005515
Csa07g00551 1091 Gene3D Immunoglobulins 498 593 IPR013783 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00551 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 2159.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01574 Csa-Chr4:15185818 Csa07g00551 Csa-Chr7:4030504 1.71E-60 dispersed
Csa06g00825 Csa-Chr6:6629031 Csa07g00551 Csa-Chr7:4030504 4.28E-45 dispersed
Csa06g01752 Csa-Chr6:15400953 Csa07g00551 Csa-Chr7:4030504 1.74E-40 dispersed
Csa07g00551 Csa-Chr7:4030504 Csa05g00039 Csa-Chr5:180422 1.94E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g00551 . 1 1092 CAMTA Transcription Factor Family AT5G64220 53.4 2.6e-275 945.3
Csa06g00825 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.3 3.2e-254 875.2
Csa06g01752 . 34 906 CAMTA Transcription Factor Family AT3G16940 54.2 8.7e-258 886.7
Csa06g01752 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.5 4.2e-192 668.7
Csa07g00551 . 1 1092 CAMTA Transcription Factor Family AT5G64220 53.4 2.6e-275 945.3
Csa06g00825 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.3 3.2e-254 875.2
Csa06g01752 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.5 4.2e-192 668.7
Csa06g01752 . 34 906 CAMTA Transcription Factor Family AT3G16940 54.2 8.7e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32281 PF03859 CG-1 8.40E-51 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00551 Csa_Chr07 FPKM 12.924214 12.7925 17.4238 15.283199 16.190666 10.597183 17.427429 20.139677 23.475075 22.772295