Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00551 ATGGCGGACCGTGGATCTTACGGCTTGGCTCCTCGTTTAGATATCGAGCAGTTATTGGTAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTACACCAAGTTTCGTATTGCTTCAGAGCCTCCAGATAGACCATCAAGTGGGTCACTTTTTCTTTTTGACCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGCTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGTTGGAGCTGTCGTTGAGACTGATGAGGTTTCAACAAGTTCACAGAAGAGTAGAAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCGACTAGCACTTTGACATCATTTTGTGAAGATGCTGATAATGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTCACCAAAAATGGGAAATGGTCTTCTGGTGAATAAACCAGATGCTGGTCAATCAAATTTTTATTTTCCTCATTCCTCTTCCAACAACGCTGAAGCTTGGTCAACAGTTCCTGCTGTGGATTATGTAACACAAGTCCAAAAAGATGGACTTGGGGGTAACGGTGGTGATACTAGTATGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCATCAATGTACAACTGGTTTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCAATTGAACCTCTGCCTTCTGGAATTGTCTTTGGACAAGAGAATTCAACTCCTGACAAGCTTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTGCTCTGGCAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCGAAAGAGCACGTTGATCATTTTCCAGATTTGTATTCAGTTTGTGACATAGATAGCAGGTTAACTGCGCAGAAATCTCACGATGCAACTTTTGGAAGAGGTCATGAGATGTTTTGTGCTCATCCTGGCAAACAAAATGAGGAGATTTTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATCGTATTCAACTGCGAGGTTGAGTTCTGACAATGATATGTCTAAAGAAGGTACTATCAGCTATTCTCTGACTTTGAAACAATCATTAATGGATGGAGAGGAGAGTTTGAAGAAAGTCGACAGCTTCTCAAGGTGGGTATCTAAGGAGCTTGGAGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGACTTGGACCACTGTAGAATGTGGTGATATGGTTGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAGCTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACAGTTGCAGATCTGGACACTGAGGTTGTGGTTATAGGGAGGTTTATGGGGAACAATAATGGCACAAACTGCCATTGGTCATGTATGTTTGGGGAAGTTGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCATGCACCACCACATAGTGTTGGGCGAGTCCCCTTTTATGTTACATGTTCCAACAGAGTAGCTTGCAGTGAGGTGCGTGAATTTGATTACTTAGCGGGCTCTGCGCAAGATGTAAATGTTACCGATATATACAACGCTGGTGCTACAGAAGAATTACGTATGCATTTGCGATTTGAGAGGTTACTGTCTCTTGAACCTTCAGATCCTTCAAATGACCTCTCTGAAAGTGCTTTGGAGAAGCAAAACTTAATCAGAGAGCTTATCACAATAAAGGAAGAAGATGATACTTATGGGGAAGATCCAAATCCTCAGAATGATCAAATTCAGCATCAAAGCAAGGAGTTCCTTTTTGTAAAGCTGATGAAAGAAAAACTGTACTCGTGGCTTATCCACAAAGTTATTGAAGGTGGCAAAGGTCCTAATATATTGGATAGTGAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTCGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCAGGAGTGAGTATCAACTTTCGAGACATTAATGGATGGACTGCTCTTCATTGGGCAGCATTATGTGGCAGGGAGTTGACAGTTGGAACCCTTATAACACTGGATGCTTCTCCTGGACTGATGTCAGATCCTTCTCCAGAAGTTCCTTTGGGCATAGTGCCTGCAGATCTTGCATCTATTAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAGTTCCATATCAATGGCTGAGACAGTACAAGATGGTGTGTCAGACGCTTCAAGGACGAAAGCTGTGCAAACTGTTTCTGAACGAAGGGCCACACCGGTAAATGATGGTTTCATGCCCGGCGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATATATCAGATATTAAGAGTGCAGTCGTTTCAGAGGAAAAAATTATCAGAGTGTGGAACTGATGAATTTGGATCCTCAGATAATAGTATTCTTTCATTTATGAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAACCCAGCTCATGCTGCTGCAGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGGCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATTGTTTGGTCAGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGCAGTGGTTTGCGAGGCTTCCGATCGGATGCAGTTCCCAAGGATCCACCCGCCTTGATGGCACCACCTACTAAAGAGGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCGCAGTATCCTGAGGGACGAGACCAATACCGTAGGCTTCTTACTGTTGTTCAAAAGTGCCGAGAAACCAAGGGGAGTGCTATGGTTGTTACTACTACTTCAGAAGAGGTAATAGAAGGCGATGACATGATTGATATCGACACCCTGCTGGATGACGATGCTTTGATGTCTATGACATTTGATTGA 3276 42.89 MADRGSYGLAPRLDIEQLLVEAKHRWLRPAEICEILRNYTKFRIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNVGAVVETDEVSTSSQKSRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADNDTYQATSRFHSFPTSPKMGNGLLVNKPDAGQSNFYFPHSSSNNAEAWSTVPAVDYVTQVQKDGLGGNGGDTSMMGSQKTLSSASWEEILHQCTTGFQTVPSHVLTSSIEPLPSGIVFGQENSTPDKLLTSNSAIKEDFGSALAMTSNWQVPFEDNTLSFSKEHVDHFPDLYSVCDIDSRLTAQKSHDATFGRGHEMFCAHPGKQNEEILPNLELQFKEGESYSTARLSSDNDMSKEGTISYSLTLKQSLMDGEESLKKVDSFSRWVSKELGEVDDLHMHPSSGLTWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTVADLDTEVVVIGRFMGNNNGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVNVTDIYNAGATEELRMHLRFERLLSLEPSDPSNDLSESALEKQNLIRELITIKEEDDTYGEDPNPQNDQIQHQSKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDSEGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAALCGRELTVGTLITLDASPGLMSDPSPEVPLGIVPADLASINGHKGISGFLAEAALTSYVSSISMAETVQDGVSDASRTKAVQTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIYQILRVQSFQRKKLSECGTDEFGSSDNSILSFMKARARKSGLSNNPAHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRSDAVPKDPPALMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSAMVVTTTSEEVIEGDDMIDIDTLLDDDALMSMTFD* 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4030504 4044122 + CsaV3_7G006500.1 Csa07g00551 536114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00551 1091 Gene3D - 914 961 - -
Csa07g00551 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1091 - -
Csa07g00551 1091 Pfam IPT/TIG domain 504 577 IPR002909 -
Csa07g00551 1091 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1091 - -
Csa07g00551 1091 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Csa07g00551 1091 MobiDBLite consensus disorder prediction 147 188 - -
Csa07g00551 1091 Gene3D - 671 856 IPR036770 -
Csa07g00551 1091 SMART iq_5 936 958 IPR000048 GO:0005515
Csa07g00551 1091 SMART iq_5 913 935 IPR000048 GO:0005515
Csa07g00551 1091 Pfam IQ calmodulin-binding motif 939 958 IPR000048 GO:0005515
Csa07g00551 1091 Pfam IQ calmodulin-binding motif 915 934 IPR000048 GO:0005515
Csa07g00551 1091 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Csa07g00551 1091 SUPERFAMILY Ankyrin repeat 689 799 IPR036770 -
Csa07g00551 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 913 964 IPR027417 -
Csa07g00551 1091 SUPERFAMILY E set domains 505 589 IPR014756 -
Csa07g00551 1091 SMART CG_1_2 18 136 IPR005559 GO:0003677
Csa07g00551 1091 ProSiteProfiles IQ motif profile. 937 961 IPR000048 GO:0005515
Csa07g00551 1091 ProSiteProfiles IQ motif profile. 914 943 IPR000048 GO:0005515
Csa07g00551 1091 Gene3D Immunoglobulins 498 593 IPR013783 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01574 Csa-Chr4:15185818 Csa07g00551 Csa-Chr7:4030504 1.71E-60 dispersed
Csa06g00825 Csa-Chr6:6629031 Csa07g00551 Csa-Chr7:4030504 4.28E-45 dispersed
Csa06g01752 Csa-Chr6:15400953 Csa07g00551 Csa-Chr7:4030504 1.74E-40 dispersed
Csa07g00551 Csa-Chr7:4030504 Csa05g00039 Csa-Chr5:180422 1.94E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32281 PF03859 CG-1 8.40E-51 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00551 K21596 - csv:101203707 2159.8