Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00576 ATGGACAGCTCCTTGGCATCAATGGAGGACTCTCCCACCAGTCCCCTCAAGGCCTTTGCTACCTTTCTTATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCACTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAATTTGCTGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTCTCTTCTCCCGTCCGACCGACTACTTGCGGGTTTTTGACGATGCAGCTGTTTGGGCTCATATGATCATTTTGGGTGATTCAAAAGGGTCTATGAATGGAGTTAAAAAAGATTTCATCCATGTTCGCATTAATGTCACTGGCTCCCCGCTGGAGTTTCCTGAGACTTTTCCTAGTATTGGGTCTGTCAGAGTGAAGCATCATGGAGTGCTTCTTACACTTAAAGGAACGGTAATCCGATCCGGGGCAATTAAGATGTACGAGGGTGAGAGGTGGTATATCTGCCGGAAATGCAAGCACAAGTTTCCAGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGTCCTTCTCAGAGGTCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGATCTGTCGTACGTCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTTTTGGGTGTGGGGTCCATTCCTCGTTCCGTTCTAATCATTCTCAAGGATGACCTTGTTGATCTTGTTAAAGCTGGAGATGACGTTATTGTTTCAGGAGTATTGAGTGCAAAGTGGTCCCCAGACCTCAAAGATGTTAGGTGTGACCTTGATCCAATGCTAATTGCAAATCATGTGAGAAGAACCAATGAACTAAAGGCCGAGGTTGACATCCCTGATGATATAATTATGCAATTCACGCAGTTCTGGTCAGATTTCAAAGACACTCCTCTAAAAGGAAGAAATGCTATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATATCTGGTACTAAAGTTCGAGGTGAATCTCATCTACTGTTGGTTGGTGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGATCTGTTATTACCACTGGTTTAGGAAGCACTAGCGCTGGGCTAACTGTTGCTGCTGTGAAGGATGGAGGGGAATGGATGCTGGAGGCTGGGGCACTTGTATTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGTGTGGCAAAGGCGGGTCTTGTAACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACAGTATGACCCTGAACAACCTCTCTCTGTCAATACAACACTCTCCGGTCCCTTATTGAGCAGATTTGATATTGTTCTTGTGCTTTTGGATACAAAAAACCCTGAATGGGATGCAGTTGTTTCATCTCATATTCTCTATGAGAGCGAACAAGAAAAGGGAAAGCGTGACAATGATCTTTCAAATAACTGGCCTCTTACTATGCTTCGAAGATACATCCAATTCGTAAAAGGATACTTCAGACCGGTGCTTACTCAGGAGGCTGAACAAATTATCTCAAACTATTATCAGCTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGGACAACGGTACGCATGCTTGAAAGCTTGATACGCTTAGCACAAGCACATGCACGTCTTATGTTTAGAAATGAGGTTACCCGGCTCGATGCCATTACGGCTATTTTGTGCATCGAATCATCCATGATGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTACCGAGAACCCAGATGAGGAATTGTCATCGTCACCTTGA 1944 44.34 MDSSLASMEDSPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLLFSRPTDYLRVFDDAAVWAHMIILGDSKGSMNGVKKDFIHVRINVTGSPLEFPETFPSIGSVRVKHHGVLLTLKGTVIRSGAIKMYEGERWYICRKCKHKFPVYPELETRNSIQLPSFCPSQRSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSVLIILKDDLVDLVKAGDDVIVSGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMQFTQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGQYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILYESEQEKGKRDNDLSNNWPLTMLRRYIQFVKGYFRPVLTQEAEQIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMMTSALVDSVGNALHSNFTENPDEELSSSP* 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4190546 4208961 + CsaV3_7G006750.1 Csa07g00576 536139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00576 647 Gene3D - 124 254 IPR012340 -
Csa07g00576 647 SUPERFAMILY Nucleic acid-binding proteins 43 261 IPR012340 -
Csa07g00576 647 Pfam MCM P-loop domain 312 515 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00576 647 Pfam MCM AAA-lid domain 536 617 IPR041562 -
Csa07g00576 647 Pfam MCM OB domain 124 254 IPR033762 -
Csa07g00576 647 PANTHER DNA HELICASE MCM9 37 644 - -
Csa07g00576 647 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 37 644 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa07g00576 647 ProSiteProfiles MCM family domain profile. 310 513 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00576 647 Gene3D - 296 623 IPR027417 -
Csa07g00576 647 PRINTS Mini-chromosome maintenance (MCM) protein family signature 460 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00576 647 PRINTS Mini-chromosome maintenance (MCM) protein family signature 487 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00576 647 PRINTS Mini-chromosome maintenance (MCM) protein family signature 409 423 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00576 647 PRINTS Mini-chromosome maintenance (MCM) protein family signature 437 450 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00576 647 PRINTS Mini-chromosome maintenance (MCM) protein family signature 351 366 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00576 647 CDD MCM9 313 617 - -
Csa07g00576 647 SMART mcm 118 619 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa07g00576 647 SMART AAA_5 352 501 IPR003593 -
Csa07g00576 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 622 IPR027417 -
Csa07g00576 647 Gene3D - 149 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00576 Csa-Chr7:4190546 Csa07g01905 Csa-Chr7:18948862 5.27E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00576 K10738 - csv:101205171 1266.91