Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g00576 | ATGGACAGCTCCTTGGCATCAATGGAGGACTCTCCCACCAGTCCCCTCAAGGCCTTTGCTACCTTTCTTATTCGCCACCACTCCGATCAGCTCCGCTCCATTGCTCACTCCCCTGATCCTAAGCTCCACTACCCTTTATTCGTGGAATTTGCTGAGCTGATGGACGACGACCCACCTCTTGCTCGTCTTCTCTTCTCCCGTCCGACCGACTACTTGCGGGTTTTTGACGATGCAGCTGTTTGGGCTCATATGATCATTTTGGGTGATTCAAAAGGGTCTATGAATGGAGTTAAAAAAGATTTCATCCATGTTCGCATTAATGTCACTGGCTCCCCGCTGGAGTTTCCTGAGACTTTTCCTAGTATTGGGTCTGTCAGAGTGAAGCATCATGGAGTGCTTCTTACACTTAAAGGAACGGTAATCCGATCCGGGGCAATTAAGATGTACGAGGGTGAGAGGTGGTATATCTGCCGGAAATGCAAGCACAAGTTTCCAGTTTATCCAGAGCTAGAAACTAGAAACTCAATACAGTTACCATCATTTTGTCCTTCTCAGAGGTCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGATCTGTCGTACGTCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTTTTGGGTGTGGGGTCCATTCCTCGTTCCGTTCTAATCATTCTCAAGGATGACCTTGTTGATCTTGTTAAAGCTGGAGATGACGTTATTGTTTCAGGAGTATTGAGTGCAAAGTGGTCCCCAGACCTCAAAGATGTTAGGTGTGACCTTGATCCAATGCTAATTGCAAATCATGTGAGAAGAACCAATGAACTAAAGGCCGAGGTTGACATCCCTGATGATATAATTATGCAATTCACGCAGTTCTGGTCAGATTTCAAAGACACTCCTCTAAAAGGAAGAAATGCTATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATATCTGGTACTAAAGTTCGAGGTGAATCTCATCTACTGTTGGTTGGTGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGATCTGTTATTACCACTGGTTTAGGAAGCACTAGCGCTGGGCTAACTGTTGCTGCTGTGAAGGATGGAGGGGAATGGATGCTGGAGGCTGGGGCACTTGTATTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGTGTGGCAAAGGCGGGTCTTGTAACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACAGTATGACCCTGAACAACCTCTCTCTGTCAATACAACACTCTCCGGTCCCTTATTGAGCAGATTTGATATTGTTCTTGTGCTTTTGGATACAAAAAACCCTGAATGGGATGCAGTTGTTTCATCTCATATTCTCTATGAGAGCGAACAAGAAAAGGGAAAGCGTGACAATGATCTTTCAAATAACTGGCCTCTTACTATGCTTCGAAGATACATCCAATTCGTAAAAGGATACTTCAGACCGGTGCTTACTCAGGAGGCTGAACAAATTATCTCAAACTATTATCAGCTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGGACAACGGTACGCATGCTTGAAAGCTTGATACGCTTAGCACAAGCACATGCACGTCTTATGTTTAGAAATGAGGTTACCCGGCTCGATGCCATTACGGCTATTTTGTGCATCGAATCATCCATGATGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTACCGAGAACCCAGATGAGGAATTGTCATCGTCACCTTGA | 1944 | 44.34 | MDSSLASMEDSPTSPLKAFATFLIRHHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLLFSRPTDYLRVFDDAAVWAHMIILGDSKGSMNGVKKDFIHVRINVTGSPLEFPETFPSIGSVRVKHHGVLLTLKGTVIRSGAIKMYEGERWYICRKCKHKFPVYPELETRNSIQLPSFCPSQRSKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRSVLIILKDDLVDLVKAGDDVIVSGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMQFTQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGQYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILYESEQEKGKRDNDLSNNWPLTMLRRYIQFVKGYFRPVLTQEAEQIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMMTSALVDSVGNALHSNFTENPDEELSSSP* | 648 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4190546 | 4208961 | + | CsaV3_7G006750.1 | Csa07g00576 | 536139 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g00576 | 647 | Gene3D | - | 124 | 254 | IPR012340 | - | |
Csa07g00576 | 647 | SUPERFAMILY | Nucleic acid-binding proteins | 43 | 261 | IPR012340 | - | |
Csa07g00576 | 647 | Pfam | MCM P-loop domain | 312 | 515 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Csa07g00576 | 647 | Pfam | MCM AAA-lid domain | 536 | 617 | IPR041562 | - | |
Csa07g00576 | 647 | Pfam | MCM OB domain | 124 | 254 | IPR033762 | - | |
Csa07g00576 | 647 | PANTHER | DNA HELICASE MCM9 | 37 | 644 | - | - | |
Csa07g00576 | 647 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 37 | 644 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Csa07g00576 | 647 | ProSiteProfiles | MCM family domain profile. | 310 | 513 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Csa07g00576 | 647 | Gene3D | - | 296 | 623 | IPR027417 | - | |
Csa07g00576 | 647 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 460 | 472 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Csa07g00576 | 647 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 487 | 495 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Csa07g00576 | 647 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 409 | 423 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Csa07g00576 | 647 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 437 | 450 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Csa07g00576 | 647 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 351 | 366 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Csa07g00576 | 647 | CDD | MCM9 | 313 | 617 | - | - | |
Csa07g00576 | 647 | SMART | mcm | 118 | 619 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Csa07g00576 | 647 | SMART | AAA_5 | 352 | 501 | IPR003593 | - | |
Csa07g00576 | 647 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 320 | 622 | IPR027417 | - | |
Csa07g00576 | 647 | Gene3D | - | 149 | 205 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa07g00576 | Csa-Chr7:4190546 | Csa07g01905 | Csa-Chr7:18948862 | 5.27E-73 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g00576 | K10738 | - | csv:101205171 | 1266.91 |