Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00582 ATGCCGGACTCCAATTTCGAAGACGCGATGTACGGTTCCGGAGTCATGGACAACGGCGGCCGGGATTTGGGTAACATTCAGAACAGAGTCGACGATGAAGATGACGACATCAACGGCGGGGAAGAGTCCATAGACAATCCTCAGATGCGGTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATCAATCGAGTTGAGGACGTTGTTCCTTCGACGTATATTTCCGGGTCTGATTACAATCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGATTCTGTATCGCCGGACAAGGTTCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAATTGGAAGTGCTCCCGTCAACCAACAGGGTGCCGATGGCTTTACTGTCAGGTCGGTTCAACCACAAAGAGCTGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGCTACAGTGTGCGAAAAGAAGTAGCCCTCAGAATGCAGCGGAAGAAGGGACAGTTTATATCCTCTAAAGCTATAGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAGACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGACCTGCTGGTCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGAGATCTTTCCAAGGTTTCAAACCCTAGCATTCAAGAACCCTCTGCGAAAGAGATTGAACAGAGCGACGGCGAGGCTGCTAACGAACACAATGCTGCAATTAATGTGGATATTCTCACTTCTAATGGAGACAAAAAACCACAAAAGAGAGTATAA 942 47.45 MPDSNFEDAMYGSGVMDNGGRDLGNIQNRVDDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVINRVEDVVPSTYISGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAIGSAPVNQQGADGFTVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNPSIQEPSAKEIEQSDGEAANEHNAAINVDILTSNGDKKPQKRV* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4222943 4229157 - CsaV3_7G006810.1 Csa07g00582 536145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00582 313 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Csa07g00582 313 Pfam CCT motif 153 195 IPR010402 GO:0005515
Csa07g00582 313 MobiDBLite consensus disorder prediction 1 57 - -
Csa07g00582 313 SMART tify_2 86 121 IPR010399 -
Csa07g00582 313 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Csa07g00582 313 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Csa07g00582 313 PANTHER GATA TRANSCRIPTION FACTOR 18 1 300 - -
Csa07g00582 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Csa07g00582 313 Gene3D - 221 285 IPR013088 GO:0006355|GO:0008270
Csa07g00582 313 MobiDBLite consensus disorder prediction 267 313 - -
Csa07g00582 313 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Csa07g00582 313 PANTHER GATA TRANSCRIPTION FACTOR 28 1 300 IPR045280 GO:0006355
Csa07g00582 313 Pfam tify domain 90 120 IPR010399 -
Csa07g00582 313 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Csa07g00582 313 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Csa07g00582 313 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02199 Csa-Chr2:19800418 Csa07g00582 Csa-Chr7:4222943 1.15E-78 dispersed
Csa07g00582 Csa-Chr7:4222943 Csa07g02285 Csa-Chr7:21265420 3.46E-70 dispersed
Csa02g02198 Csa-Chr2:19791788 Csa07g00582 Csa-Chr7:4222943 3.22E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32282 PF06203 CCT 1.70E-15 CL0281 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00582 - - csv:101222542 603.979