Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00582 ATGCCGGACTCCAATTTCGAAGACGCGATGTACGGTTCCGGAGTCATGGACAACGGCGGCCGGGATTTGGGTAACATTCAGAACAGAGTCGACGATGAAGATGACGACATCAACGGCGGGGAAGAGTCCATAGACAATCCTCAGATGCGGTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATCAATCGAGTTGAGGACGTTGTTCCTTCGACGTATATTTCCGGGTCTGATTACAATCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGATTCTGTATCGCCGGACAAGGTTCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAATTGGAAGTGCTCCCGTCAACCAACAGGGTGCCGATGGCTTTACTGTCAGGTCGGTTCAACCACAAAGAGCTGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGCTACAGTGTGCGAAAAGAAGTAGCCCTCAGAATGCAGCGGAAGAAGGGACAGTTTATATCCTCTAAAGCTATAGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAGACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGACCTGCTGGTCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGAGATCTTTCCAAGGTTTCAAACCCTAGCATTCAAGAACCCTCTGCGAAAGAGATTGAACAGAGCGACGGCGAGGCTGCTAACGAACACAATGCTGCAATTAATGTGGATATTCTCACTTCTAATGGAGACAAAAAACCACAAAAGAGAGTATAA 942 47.45 MPDSNFEDAMYGSGVMDNGGRDLGNIQNRVDDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVINRVEDVVPSTYISGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAIGSAPVNQQGADGFTVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNPSIQEPSAKEIEQSDGEAANEHNAAINVDILTSNGDKKPQKRV* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4222943 4229157 - CsaV3_7G006810.1 Csa07g00582 536145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00582 313 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Csa07g00582 313 Pfam CCT motif 153 195 IPR010402 GO:0005515
Csa07g00582 313 MobiDBLite consensus disorder prediction 1 57 - -
Csa07g00582 313 SMART tify_2 86 121 IPR010399 -
Csa07g00582 313 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Csa07g00582 313 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Csa07g00582 313 PANTHER GATA TRANSCRIPTION FACTOR 18 1 300 - -
Csa07g00582 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Csa07g00582 313 Gene3D - 221 285 IPR013088 GO:0006355|GO:0008270
Csa07g00582 313 MobiDBLite consensus disorder prediction 267 313 - -
Csa07g00582 313 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Csa07g00582 313 PANTHER GATA TRANSCRIPTION FACTOR 28 1 300 IPR045280 GO:0006355
Csa07g00582 313 Pfam tify domain 90 120 IPR010399 -
Csa07g00582 313 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Csa07g00582 313 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Csa07g00582 313 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00582 - - - csv:101222542 603.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02199 Csa-Chr2:19800418 Csa07g00582 Csa-Chr7:4222943 1.15E-78 dispersed
Csa07g00582 Csa-Chr7:4222943 Csa07g02285 Csa-Chr7:21265420 3.46E-70 dispersed
Csa02g02198 Csa-Chr2:19791788 Csa07g00582 Csa-Chr7:4222943 3.22E-66 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g02285 . 1 230 Tify Gene Family AT3G21175 56.5 4.9e-59 224.6
Csa02g02199 . 45 250 Tify Gene Family AT4G24470 59.6 2.6e-64 242.7
Csa07g00582 . 89 267 Tify Gene Family AT4G24470 60.2 2.6e-48 189.5
Csa07g02285 . 1 290 Tify Gene Family AT1G51600 58.7 1.3e-86 316.6
Csa07g00582 . 86 274 Tify Gene Family AT1G51600 59.4 1.8e-51 199.9
Csa02g02198 . 66 246 Tify Gene Family AT1G51600 57.4 6.9e-51 198.0
Csa02g02199 . 45 250 Tify Gene Family AT4G24470 59.6 2.6e-64 242.7
Csa07g00582 . 89 267 Tify Gene Family AT4G24470 60.2 2.6e-48 189.5
Csa07g02285 . 1 290 Tify Gene Family AT1G51600 58.7 1.3e-86 316.6
Csa07g00582 . 86 274 Tify Gene Family AT1G51600 59.4 1.8e-51 199.9
Csa02g02198 . 66 246 Tify Gene Family AT1G51600 57.4 6.9e-51 198.0
Csa07g02285 . 1 230 Tify Gene Family AT3G21175 56.5 4.9e-59 224.6
Csa02g01125 . 1 180 Tify Gene Family AT4G14713 51.0 2.2e-46 182.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32282 PF06203 CCT 1.70E-15 CL0281 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00582 Csa_Chr07 FPKM 4.029918 4.808263 6.239925 4.591072 8.106255 6.182613 8.088168 3.591464 3.987344 5.174156