Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00588 ATGGAGAATAACAATATCTTAATCACTGACGACGCTGCAAACGGAAAGCTCAACGATGGAAAAGACGCCACCACTAACAATGCCTCCGTCTGTGGTTACGACTCGCTTCATCAGCTCCTTGCTGCAAATCTCAAACCTCACATATTTCAGGAAGTTAGCCGGTTGCTGTTAGGGCTCAACTGTGGAAAGCCACTTCAAACTATTTCTCTTGCAGAACCTGTGAATAGTCTTTCTCTGGAGCATGATTTTGACCTCCAGGCTTTCCGCTTTCATGCCGACAAGGAATCAGTGAGAGAACCTCGAATAGTAAGGGTGGGTCTTATTCAAAATTCTATTGCTCTTCCTACAACTGCCCCCTTTTTAGACCAGAAGAGGGCTATTCTTGAGAAAGTGAAGCCAATTATTGATGCAGCAGGTGCTTCTGGAGTCAACATATTATGCTTGCAAGAAGCATGGATGATGCCATTTGCCTTTTGTACCCGTGAAAAGCGGTGGTGTGAATTTGCAGAGCCAATTGATGGGGAATCTACACGGTTTCTTCAGGATCTTGCAATAAGATACAACATGGTCATTGTAAGTTCAATTCTTGAGAGAGATGTTAGTCATGGAGATACTTTGTGGAATACTGCTGTTGTTATTGGTAATCATGGAAACATAATTGGCAAGCATCGCAAGAACCATATACCAAGAGTTGGCGACTTTAACGAGAGCACTTATTACATGGAAGGGAACACCGGCCATCCTGTGTTTGAGACAGCTTATGGGAAAATTGGAATAAATATATGTTACGGGAGGCACCACCCTTTAAACTGGTTAGCTTTCGGTTTAAATGGTGCCGAGATCGTTTTCAACCCTTCTGCAACTGTTGGTGAACTTAGTGAACCAATGTGGCCTATTGAGGCCCGAAATGCTGCAATAGCAAATAGTTATTTTGTCGGATCAATCAATCGCGTTGGGACCGAGATTTTCCCAAATCCATTCACTTCGGGTGATGGGAAACCCCAACACACAGATTTTGGTCACTTCTACGGGTCCAGCCATTTCTCTGCACCAGATGCATCTTGCACTCCCTCGCTCTCCCGTTTCCGGGATGGTTTACTAATCTCCGATATGGATCTTAACTTGTGTAGGCAGCTAAAAGATAAGTGGGGGTTCCGAATGACTGCTCGATATGAGTTGTATGCCAAAATGCTTGCTCAGTATCTAAAGCCTGACTTTGAGCCTCAAGTCATTTCTGATCCTTTGTTACACAAGAAGAAGGCTTCTTGA 1269 43.97 MENNNILITDDAANGKLNDGKDATTNNASVCGYDSLHQLLAANLKPHIFQEVSRLLLGLNCGKPLQTISLAEPVNSLSLEHDFDLQAFRFHADKESVREPRIVRVGLIQNSIALPTTAPFLDQKRAILEKVKPIIDAAGASGVNILCLQEAWMMPFAFCTREKRWCEFAEPIDGESTRFLQDLAIRYNMVIVSSILERDVSHGDTLWNTAVVIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGINICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEIFPNPFTSGDGKPQHTDFGHFYGSSHFSAPDASCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAKMLAQYLKPDFEPQVISDPLLHKKKAS* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4263074 4268045 - CsaV3_7G006870.1 Csa07g00588 536151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00588 422 PANTHER NITRILASE C965.09-RELATED 21 415 - -
Csa07g00588 422 Gene3D - 29 414 IPR036526 -
Csa07g00588 422 Pfam Carbon-nitrogen hydrolase 106 380 IPR003010 GO:0006807
Csa07g00588 422 SUPERFAMILY Carbon-nitrogen hydrolase 98 389 IPR036526 -
Csa07g00588 422 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 103 373 IPR003010 GO:0006807
Csa07g00588 422 PANTHER BNAANNG15120D PROTEIN 21 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00588 K01431 UPB1, pydC; beta-ureidopropionase [EC:3.5.1.6] - csv:101223016 868.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01583 Csa-Chr1:11444401 Csa07g00588 Csa-Chr7:4263074 3.09E-15 dispersed
Csa05g00648 Csa-Chr5:4314590 Csa07g00588 Csa-Chr7:4263074 1.46E-10 dispersed
Csa07g00588 Csa-Chr7:4263074 Csa01g01492 Csa-Chr1:10635516 2.96E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g971 . . . . . . . . . . . . . . . . . Bhi05g00928 . . . . . . . . . . . . . . . . . . Csa07g00588 . Cme01g00208 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00222 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008913 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 1 0 0 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00588 Csa_Chr07 FPKM 0.227854 0.342629 0.304975 0.283018 0.0 0.0 0.0 0.575163 0.502216 0.443814