Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00589 ATGGCCGACGACACCGTCAAGGCGGAGGCTCTGCAGATTATTGGCATGTTTCAAGTTCTTCCCAAATTGGTAGTCTTCGACCTCGATTACACTCTCTGGCCATTCTATTGTGAATGTCGCTCCAAACGTGAAATGCCATCTATGTATCCTCATGCCAAAAGCATATTATATGCTCTTAAAGACAAGGGAATTGACCTTGCCATTGCTTCTAGATCACCAACATCTGATATTGCCAAGACGTTTATTGGTAAATTGGGAATTGAGTCAATGTTTGTAGCTCAGGAGATATTTTCCAGTTGGACACACAAAACAGATCACTTCCAGAGAATTCATTCTCGGACTGGTGTACCATTCAAGTCTATGCTATTCTTTGATGACGAGGACCGTAACATTGAAACTGTTGGAAAAATGGGAGTAACTAGCATTCTTGTTGGCAATGGAGTTAATCTTGGGGCACTGAGGCAGGGGCTCACAAGTTACTCCCAGAATGTGAATAAGATTGAGAAGAACAAGAAGAAATGGGCAAAGTACACACAGAACTCATCTTCATCAGAAAAGACCGAGTAA 567 42.15 MADDTVKAEALQIIGMFQVLPKLVVFDLDYTLWPFYCECRSKREMPSMYPHAKSILYALKDKGIDLAIASRSPTSDIAKTFIGKLGIESMFVAQEIFSSWTHKTDHFQRIHSRTGVPFKSMLFFDDEDRNIETVGKMGVTSILVGNGVNLGALRQGLTSYSQNVNKIEKNKKKWAKYTQNSSSSEKTE* 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4269757 4272578 - CsaV3_7G006880.1 Csa07g00589 536152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00589 188 SFLD C1.5.2: MDP Like 3 167 - -
Csa07g00589 188 SFLD Haloacid Dehalogenase 3 167 - -
Csa07g00589 188 TIGRFAM HAD-SF-IIIC: HAD phosphatase, family IIIC 22 135 IPR010033 -
Csa07g00589 188 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE 1-LIKE 1 177 - -
Csa07g00589 188 CDD HAD_MDP-1_like 21 144 IPR035679 -
Csa07g00589 188 SUPERFAMILY HAD-like 21 158 IPR036412 -
Csa07g00589 188 Pfam Acid Phosphatase 20 41 IPR010036 GO:0016791
Csa07g00589 188 Pfam Acid Phosphatase 47 162 IPR010036 GO:0016791
Csa07g00589 188 Gene3D - 4 166 IPR023214 -
Csa07g00589 188 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 1 177 IPR010036 GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00589 K17619 MDP1; magnesium-dependent phosphatase 1 [EC:3.1.3.48 3.1.3.-] - csv:101202744 372.474
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g963 . . . . . . . . . . . . . . . . . Bhi05g00929 . . . . . . . . . . . . . . . . . . Csa07g00589 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005489 2 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00589 Csa_Chr07 FPKM 4.332067 6.030654 3.672379 3.970967 13.604151 12.515063 13.783975 3.885695 4.141633 4.33619