Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00612 ATGTTGCAATCTTCGATTTGGCGAGTGAAAAAATTGAGTGTTCTGAGGCCTCAGATCTTTGCTCTTGGAAATGTTCGTTTTTCCACTTTTGCTGAACCGTCTTCAAAGCCTAATCCTCCGAGGGTTCCAAATCTCATAAGAGGGACTTTTGTTGATTCTCAATCCTCAGCATTTATAGATGTCATAAACCCAGCAACGCAAGAAGTTGTTTCTCAAGTTCCATTGAGCACAAATGATGAATTTAAAGCTGCAGTGTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGTTCAAGCTGCAAGAACTTATTAGGCGAGATATAGACAAACTTGCTCTAAATATTACCACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATTTCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCTAATGTATCACATGGAATTGATACCTATAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCGTTCAATTTTCCAGCAATGATCCCACTTTGGATGTTCCCAATTGCTGTTACATGTGGAAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCTGGGGCTTCTATAATGCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTGATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTTAATGCTATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGTGCAAAAAATCATGCCATTGTCTTGCCCGATGCCGGCATAGATACTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGCGCTGCTGGACAAAGATGCATGGCACTTAGTACAGTTGTCTTTGTTGGAGAATTCAAGTTTTGGGAGGATGAACTTGTAGTACGTGCCAAAGCTCTAAAAGTAAACTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGATAGGATTCACAGATTGATTCAATCTGGCATCGATAGTGGAGCCACACTACTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGCATGGAAATTTTATTGGCCCTACTATTTTAACAGATGTGACTCCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGAGGGCTAAAAGTTTAGAAGACGCCATTAGCATCGTTAATGGAAATAGGTATGGAAATGGAGCTTCCATATTCACCACATCTGGGATAGCCGCGAGGAAGTTTCAAGCGGATATTGAAGCTGGACAGGTTGGGATCAACGTTCCAATTCCAGTTCCCTTGCCTTTCTTCTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAACTTTTATGGGAAGGCAGGGGTGAACTTCTTCACACAGATAAAAACAGTGACACAACAATGGAAAGACTCAACTGGAGGATGTGCAGTCAATCTTGCAATGCCAACCTCTTTGAAGTCATAG 1614 42.5 MLQSSIWRVKKLSVLRPQIFALGNVRFSTFAEPSSKPNPPRVPNLIRGTFVDSQSSAFIDVINPATQEVVSQVPLSTNDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIMLAELAMEAGLPDGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDAGIDTTLNALVAAGFGAAGQRCMALSTVVFVGEFKFWEDELVVRAKALKVNSGTEPDADLGPVISKQAKDRIHRLIQSGIDSGATLLLDGRNIVVPGYEHGNFIGPTILTDVTPDMECYKEEIFGPVLLCMRAKSLEDAISIVNGNRYGNGASIFTTSGIAARKFQADIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSTGGCAVNLAMPTSLKS* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4455770 4463779 - CsaV3_7G007110.1 Csa07g00612 536175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00612 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491
Csa07g00612 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491
Csa07g00612 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491
Csa07g00612 537 SUPERFAMILY ALDH-like 37 519 IPR016161 GO:0016491
Csa07g00612 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491
Csa07g00612 537 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 44 518 IPR010061 GO:0004491
Csa07g00612 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 14 534 IPR010061 GO:0004491
Csa07g00612 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620
Csa07g00612 537 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 14 534 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03100 Csa-Chr6:26551837 Csa07g00612 Csa-Chr7:4455770 0 dispersed
Csa07g00612 Csa-Chr7:4455770 Csa07g02347 Csa-Chr7:21717182 2.88E-42 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00612 K00140 - csv:101204924 1070.46