Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00612 ATGTTGCAATCTTCGATTTGGCGAGTGAAAAAATTGAGTGTTCTGAGGCCTCAGATCTTTGCTCTTGGAAATGTTCGTTTTTCCACTTTTGCTGAACCGTCTTCAAAGCCTAATCCTCCGAGGGTTCCAAATCTCATAAGAGGGACTTTTGTTGATTCTCAATCCTCAGCATTTATAGATGTCATAAACCCAGCAACGCAAGAAGTTGTTTCTCAAGTTCCATTGAGCACAAATGATGAATTTAAAGCTGCAGTGTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGTTCAAGCTGCAAGAACTTATTAGGCGAGATATAGACAAACTTGCTCTAAATATTACCACAGAACAAGGAAAAACATTAAAGGATGCACATGGAGATGTATTTCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCTAATGTATCACATGGAATTGATACCTATAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCGTTCAATTTTCCAGCAATGATCCCACTTTGGATGTTCCCAATTGCTGTTACATGTGGAAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCTGGGGCTTCTATAATGCTTGCAGAGTTAGCAATGGAGGCTGGATTGCCTGATGGTGTCCTAAATGTGGTTCATGGTACTAATGATGTTGTTAATGCTATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAACATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGTGCAAAAAATCATGCCATTGTCTTGCCCGATGCCGGCATAGATACTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGCGCTGCTGGACAAAGATGCATGGCACTTAGTACAGTTGTCTTTGTTGGAGAATTCAAGTTTTGGGAGGATGAACTTGTAGTACGTGCCAAAGCTCTAAAAGTAAACTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGATAGGATTCACAGATTGATTCAATCTGGCATCGATAGTGGAGCCACACTACTGCTAGATGGGAGAAATATAGTGGTTCCTGGATACGAGCATGGAAATTTTATTGGCCCTACTATTTTAACAGATGTGACTCCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGAGGGCTAAAAGTTTAGAAGACGCCATTAGCATCGTTAATGGAAATAGGTATGGAAATGGAGCTTCCATATTCACCACATCTGGGATAGCCGCGAGGAAGTTTCAAGCGGATATTGAAGCTGGACAGGTTGGGATCAACGTTCCAATTCCAGTTCCCTTGCCTTTCTTCTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAACTTTTATGGGAAGGCAGGGGTGAACTTCTTCACACAGATAAAAACAGTGACACAACAATGGAAAGACTCAACTGGAGGATGTGCAGTCAATCTTGCAATGCCAACCTCTTTGAAGTCATAG 1614 42.5 MLQSSIWRVKKLSVLRPQIFALGNVRFSTFAEPSSKPNPPRVPNLIRGTFVDSQSSAFIDVINPATQEVVSQVPLSTNDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTLKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIMLAELAMEAGLPDGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDAGIDTTLNALVAAGFGAAGQRCMALSTVVFVGEFKFWEDELVVRAKALKVNSGTEPDADLGPVISKQAKDRIHRLIQSGIDSGATLLLDGRNIVVPGYEHGNFIGPTILTDVTPDMECYKEEIFGPVLLCMRAKSLEDAISIVNGNRYGNGASIFTTSGIAARKFQADIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSTGGCAVNLAMPTSLKS* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4455770 4463779 - CsaV3_7G007110.1 Csa07g00612 536175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00612 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491
Csa07g00612 537 Pfam Aldehyde dehydrogenase family 50 514 IPR015590 GO:0016491
Csa07g00612 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 61 495 IPR016162 GO:0016491
Csa07g00612 537 SUPERFAMILY ALDH-like 37 519 IPR016161 GO:0016491
Csa07g00612 537 CDD ALDH_F6_MMSDH 42 518 IPR010061 GO:0004491
Csa07g00612 537 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 44 518 IPR010061 GO:0004491
Csa07g00612 537 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 14 534 IPR010061 GO:0004491
Csa07g00612 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620
Csa07g00612 537 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 14 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00612 K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] - csv:101204924 1070.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03100 Csa-Chr6:26551837 Csa07g00612 Csa-Chr7:4455770 0 dispersed
Csa07g00612 Csa-Chr7:4455770 Csa07g02347 Csa-Chr7:21717182 2.88E-42 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02053 . 11 508 Aldehyde Dehydrogenase Gene Family AT3G24503 71.0 7.5e-212 733.4
Csa02g00312 . 56 541 Aldehyde Dehydrogenase Gene Family AT3G24503 54.4 2.8e-158 555.4
Csa01g00160 . 64 549 Aldehyde Dehydrogenase Gene Family AT3G24503 54.8 3.2e-154 542.0
Csa01g00160 . 4 549 Aldehyde Dehydrogenase Gene Family AT3G48000 78.2 2.2e-254 874.8
Csa02g00312 . 1 541 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 1.8e-248 855.1
Csa01g02053 . 23 508 Aldehyde Dehydrogenase Gene Family AT3G48000 54.9 2.5e-160 562.4
Csa02g00312 . 1 390 Aldehyde Dehydrogenase Gene Family AT1G23800 75.4 3.4e-170 594.7
Csa01g00160 . 4 392 Aldehyde Dehydrogenase Gene Family AT1G23800 74.4 1.7e-166 582.4
Csa01g02053 . 23 351 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 1.5e-101 366.7
Csa04g01789 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.8 1.8e-179 625.9
Csa04g01789 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 1.6e-178 622.5
Csa04g01412 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 2.6e-117 419.1
Csa04g00526 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 3.6e-114 408.7
Csa04g00526 . 1 478 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 4.6e-182 634.4
Csa04g01412 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.8 8.4e-160 560.5
Csa06g01146 . 37 542 Aldehyde Dehydrogenase Gene Family AT1G79440 76.9 5.6e-234 807.0
Csa07g00612 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 81.5 1.2e-235 812.8
Csa06g03100 . 197 665 Aldehyde Dehydrogenase Gene Family AT2G14170 63.4 7.1e-177 617.5
Csa01g00183 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.6 8.1e-251 862.8
Csa01g00183 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G48170 81.0 1.4e-253 872.1
Csa02g00266 . 1 497 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 2.2e-264 907.9
Csa01g00788 . 21 556 Aldehyde Dehydrogenase Gene Family AT5G62530 77.3 4.5e-258 887.1
Csa06g01741 . 1 600 Aldehyde Dehydrogenase Gene Family AT3G66658 74.2 1.9e-270 928.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00612 Csa_Chr07 FPKM 3.750916 5.196702 13.889669 16.862432 3.254214 3.237979 2.438074 5.851836 6.294456 6.571969