Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00618 ATGGCTGCCATAATCTCCATTTCCAGTTATCTTCTTCCTCTGTTCTTCTTCTTCATCTACATCCTATCATTCTTCTCCACACTTACACTTGCAAATTCTTTAGCTTTCAATTTCTCATCTTTCGATTCAAGTAATACCCACATATTCTACGAGAAAGCATTCCCATCAAATAGAACAATCAAGCTCACTGGAGAAACTGTTAATAAAAACCAAAATTTCACAGGAAGAGCAACCTACTTTAAGCCTTTTCATCTTTGGGACAAACCCTCTGGGAATCTATCAAGTTTTCAAACTCATTTCTCCTTTGCTATTGATTCAGAAGGAGCAGAAAGGTATGGAGATGGGCTTACCTTCTTTTTTGCTCCTAATAATTCTAGGCTTGATGCTGAGATCTCAAAGGGTAGTGGATTAGGGATTGGGTATAATCCCAGTTTGACAAATTTAACATATAGTTCATTTTTTGCAATTGAGTTTGATATCTTTAGTAATTTCTTTGATCCGCCTCAAAAAGTTGAACATGTAGGTATTGATATCAATTCAATGTCTTCTGTTGCTTACTCAATATGGAAATGTGATATTAAGAGCGGGAGGAGGACGGATGTTTGGATTAATTATGATTCTGCTACTTTGAATTTGAGTATTACTTTTACTGGGTATGAGAATAATAAAACTATATTGCAGAGACTTAATCATGATGTAGACTTTAGGTTGACTCTACCTGAATGGGTTACTTTTGGGTTTTCTGCTGCGACTGGAACTCTATATGCAACTCACAACATATATTCTTGGGATTTTAAGTCAACTCTAAATTTGAATTCTGATTCTAATTTGGCCCCAAGTCCTGGTCAGGGTAGCAAGGTAGGCCTAGTAGTTGGAGTGGGTGTTGGTGTTGGTGTAGTGTTCTTAGTCTGTGGTTTGATTATAGTTTGGATCTGTTTTTTGAAGAAAAGAAAGAAGAGGATGAAAATGAATTGGGAAGAGGATGTTGTGTTGGATGATAGTGAGTTTGAAAAGGGTAAAGGACCTCGGAAGTTTTCGTATAGCGAATTGGCTCGAGCAACGAATAACTTTTGGGAGGATGAAAAGCTTGGGGAAGGAGGATTTGGTGGCGTTTATAAAGGTTTCTTGAGGGACTTAAATAGCTATGTTGCTGTGAAGAAAGTGTCAAAAGGGTCTAGACAGGGAATAAAAGAGTACGCATCTGAGGTGAAAATCATCAGCCAGTTGAGGCATAGAAACTTAGTGCAACTCATCGGTTGGTGCCATGAAAGAGGTGAGCTCTTGCTGGTTTATGAATTCATGTCAAATGGAAGTTTAGATGCCCATCTTTTTAAAGAAAACAACTTCTTAACATGGGAACATAGATACAAAGTTGCTCAAGGCATTGCCTCGGCTTTGTTATATCTGCATGAAGAGTGGGAAAAATGCGTGATACATCGAGATATAAAGTCAAGTAATGTGATGTTGGATTCAGATTTCAATGCAAAGCTTGGAGATTTTGGGTTGGCTAGGCTAGTGGATCATGCAATAGGCTCACAAACAACAGTTCTTGCTGGCACAATGGGCTACATGGCTCCTGAATGTGCTATATCAGGAAGAGCCAGTAAAGAATCAGATGTCTTCAGCTTCGGGATTGTAGCATTGGAAATTGCTTGTGGAAGAAGACCCTACAACCCTAATGTAGAGGAGGCAAAAATGGTGATGGTAGAGTGGGTTTGGGAGCTTTATGGGAATGGAAGGCTTCTTGAAGCAGCCGACACGAAACTCCATGGAAGCTTTGAGAATGAACCTCAACAACGTCAACAGATTGAGTGTTTGATGGTTGTTGGACTGTGGTGTGCTCATCCAGATATAAACTGTAGACCATCAATAAGACAAGCAATTCATGTGATGAACTTTGAAGCCTCATTACCTGTTCTTCCTTTACAGTTCCCTACACTTGCTTATCATCATCATCCTCTTTCAGTGAACAGACCAATTATTTCTTCTTCATTTTCATCAACTCAAGATAGTGTTGTTTCTCAAAGTACTGGAAATGGCTTCAACTCTACTAATGTCTTAACTACTTCACAGGAGACTACAACTTCTTCAACTTCTTTTTCTGCATCAACTTCACTTTTGAATACACGGTAA 2133 38.82 MAAIISISSYLLPLFFFFIYILSFFSTLTLANSLAFNFSSFDSSNTHIFYEKAFPSNRTIKLTGETVNKNQNFTGRATYFKPFHLWDKPSGNLSSFQTHFSFAIDSEGAERYGDGLTFFFAPNNSRLDAEISKGSGLGIGYNPSLTNLTYSSFFAIEFDIFSNFFDPPQKVEHVGIDINSMSSVAYSIWKCDIKSGRRTDVWINYDSATLNLSITFTGYENNKTILQRLNHDVDFRLTLPEWVTFGFSAATGTLYATHNIYSWDFKSTLNLNSDSNLAPSPGQGSKVGLVVGVGVGVGVVFLVCGLIIVWICFLKKRKKRMKMNWEEDVVLDDSEFEKGKGPRKFSYSELARATNNFWEDEKLGEGGFGGVYKGFLRDLNSYVAVKKVSKGSRQGIKEYASEVKIISQLRHRNLVQLIGWCHERGELLLVYEFMSNGSLDAHLFKENNFLTWEHRYKVAQGIASALLYLHEEWEKCVIHRDIKSSNVMLDSDFNAKLGDFGLARLVDHAIGSQTTVLAGTMGYMAPECAISGRASKESDVFSFGIVALEIACGRRPYNPNVEEAKMVMVEWVWELYGNGRLLEAADTKLHGSFENEPQQRQQIECLMVVGLWCAHPDINCRPSIRQAIHVMNFEASLPVLPLQFPTLAYHHHPLSVNRPIISSSFSSTQDSVVSQSTGNGFNSTNVLTTSQETTTSSTSFSASTSLLNTR* 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4492517 4494949 - CsaV3_7G007170.1 Csa07g00618 536181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00618 710 ProSitePatterns Protein kinases ATP-binding region signature. 363 387 IPR017441 GO:0005524
Csa07g00618 710 Pfam Legume lectin domain 34 275 IPR001220 GO:0030246
Csa07g00618 710 MobiDBLite consensus disorder prediction 674 710 - -
Csa07g00618 710 ProSitePatterns Legume lectins alpha-chain signature. 239 248 IPR000985 -
Csa07g00618 710 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 273 IPR013320 -
Csa07g00618 710 SMART serkin_6 357 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00618 710 Gene3D Transferase(Phosphotransferase) domain 1 434 649 - -
Csa07g00618 710 CDD lectin_legume_LecRK_Arcelin_ConA 34 269 IPR001220 GO:0030246
Csa07g00618 710 Gene3D - 31 278 - -
Csa07g00618 710 ProSiteProfiles Protein kinase domain profile. 357 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00618 710 PANTHER - 22 666 - -
Csa07g00618 710 SUPERFAMILY Protein kinase-like (PK-like) 342 669 IPR011009 -
Csa07g00618 710 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 22 666 - -
Csa07g00618 710 Pfam Protein kinase domain 359 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00618 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Csa07g00618 710 CDD STKc_IRAK 363 632 - -
Csa07g00618 710 Gene3D Phosphorylase Kinase; domain 1 342 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00618 - - - csv:101208539 1311.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02835 Csa-Chr2:24635709 Csa07g00618 Csa-Chr7:4492517 1.68E-140 dispersed
Csa07g00618 Csa-Chr7:4492517 Csa07g00622 Csa-Chr7:4501633 2.93E-165 dispersed
Csa07g00620 Csa-Chr7:4498245 Csa07g00618 Csa-Chr7:4492517 4.73E-17 dispersed
Csa07g00613 Csa-Chr7:4466391 Csa07g00618 Csa-Chr7:4492517 1.77E-151 proximal
Csa07g00618 Csa-Chr7:4492517 Csa07g00619 Csa-Chr7:4495826 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g907 . . . . . . . . Cmo19g00505 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00683 Csa07g00618 . Cme01g00183 . . . . . . . . . . . . Cma19g00488 . Car19g00365 . . . . . . . . . . . . . . . . . . Chy01g00191 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78474 PF00069 Pkinase 5.20E-50 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00618 Csa_Chr07 FPKM 24.625181 28.646748 61.252602 66.110146 24.204502 23.183712 22.976028 57.169365 52.34938 55.891342