Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00619 ATGGCTGCACAAAATAATCTTCTCATTCATTTGTTCTTTCTTGTTCCATTTGCAACTTCTTTATCTTTCAATTTCACCTCTTTCAATCAAGGTAATGCCGACATGATCTACGACAGAACATTCCCAACAAACCAAGTAATTGAGCTCACTGGAGACTCATCAAACAACAATATGAATTTTGTTGGACGAGCTACGTATTCGCAACCATTGCATCTTTGGGATGAAGGCTCTGGAAACATGTCAAGTTTCCAAACTCATTTCTCCTTTGCCATCAATTCAAGAGGAAGAGCTAACTATGGTGATGGCCTTACCTTCTTCTTTGCTCCCAATGGTTCTATCCTCCAGGCCAACATCTCAAGAGGCAGTGGCTTAGGTATTGGCTATGATCCCGAGTTATGGAATGGGACTGCCACGTTTTTTGCAGTTGAGTTTGATATCTACAGCAACAATTTTGATCCACCTTTCGAACACGTAGGTATCGATATTAATTCGATGAAATCTATTGCGTATTCGAGATGGAAATGTGATATCATGGGAGGGAAGAGGAATGATGTTTGGATTAACTATGATTCCGATACTCATAATTTGAGTGTTGTTTTTAGTGGGTTTGAGAATAATAATACTCTGTTGCAACACCTTCACCATGTTGTAGATTTGAGGTTGAATCTACCTGAATGGGTTACTTTTGGTTTTTCTGCTTCTACTGGATATGAATATGCAACTCACTCTGTATATTCTTGGTCTTTTCACTCAACCCTTGAGTTGACCCTTGAACCAACCTTCACTACTGATCCCAACTCGGTTGCAAGTGCCCCAAGTCCTGGCCCAAGCTTGCCTCCAAACAATAATGATGGTAGCACTAGCAAGACAGGTCTAGAAATTGGATTGGGCATTGCTGGAGGAGTTATCTTTGTGGGTGGGTTAGTGATCGTTTGGATTATTGTTTGGAAGAAGATGGCAGCGATGAAGAACATAGAGGAGGAGATTATGTTGGATGACTCCGAGTTCGAGAAGGGTAAAGGACCTCGACGGTTTTTGTATAAGGAATTGGCTCGAGCAACGAACAACTTTAAGGAGGATAAGAAGCTTGGCGAAGGAGGATTTGGTGGGGTTTATAAAGGTTTCTTAAGGGAACTGAACTGCAATGTTGCTGTGAAGAGAATATCAAAAGGGTCTAAACAAGGGATAAAGGAGTATGCATCTGAGGTGAAAATCATAAGCCAATTAAGGCATAGAAACTTGGTTCAACTAATTGGTTGGTGTCATGAGAAAGACGAACTTCTATTGGTTTATGAATTCATGCCAAATGGAAGCTTAGATACCCATCTTTTCAAACCAAACAATTTCCTGACATGGGAGTTAAGGTACAAAATCGGTCAAGGAATTGCCTCTGCTTTACTGTATCTTCATGAAGAATGGGAAATGTGTGTGCTGCATAGAGATATAAAGTCAAGTAATGTGATGTTGGATTTGAACTACAATGCAAAGCTTGGAGATTTTGGGTTGGCTAGGTTAGTGAACCATGGCAAAGGTTCACAAACAACTGCTCTTGCTGGGACACTCGGTTATTTGGCTCCTGAATGTGCAACAACAGGAAGGGCTACAAAGGAAACAGATGTGTATAGTTTTGGGATTGTTGCTTTGGAAATTGCTTGTGGAAGAATGCCATTCAATCCCAATGTAGAGGAAGAGAAGATGGTTATGGTTGAATGGGTTTGGAAGCTTTATGGCTGTGGGAAGGTTCTAGATGCAATTGACTCAAAACTTAGAAAAGAAATTAGATCATTTGGAGATGAGGAGAAGATGATGGAGTGTTTGATGGTGGTGGGTCTATGGTGTGCTCATCCAGATAGCAATGCTAGGCCTTCAATAAGGCAAGCCATTAATGTGTTGAACTTTGAAGCACCATTGCCAATTCTTCCTTCTCACTTGCCAGCACCCACTTATGATTTTAGACCAATTGCTTCTTCATCTACTTCATCTTCAACAACTCAAAGTGGCGTTGCTTCTCTTGCTAGTAATAGTTCCAACTTATAG 2037 40.75 MAAQNNLLIHLFFLVPFATSLSFNFTSFNQGNADMIYDRTFPTNQVIELTGDSSNNNMNFVGRATYSQPLHLWDEGSGNMSSFQTHFSFAINSRGRANYGDGLTFFFAPNGSILQANISRGSGLGIGYDPELWNGTATFFAVEFDIYSNNFDPPFEHVGIDINSMKSIAYSRWKCDIMGGKRNDVWINYDSDTHNLSVVFSGFENNNTLLQHLHHVVDLRLNLPEWVTFGFSASTGYEYATHSVYSWSFHSTLELTLEPTFTTDPNSVASAPSPGPSLPPNNNDGSTSKTGLEIGLGIAGGVIFVGGLVIVWIIVWKKMAAMKNIEEEIMLDDSEFEKGKGPRRFLYKELARATNNFKEDKKLGEGGFGGVYKGFLRELNCNVAVKRISKGSKQGIKEYASEVKIISQLRHRNLVQLIGWCHEKDELLLVYEFMPNGSLDTHLFKPNNFLTWELRYKIGQGIASALLYLHEEWEMCVLHRDIKSSNVMLDLNYNAKLGDFGLARLVNHGKGSQTTALAGTLGYLAPECATTGRATKETDVYSFGIVALEIACGRMPFNPNVEEEKMVMVEWVWKLYGCGKVLDAIDSKLRKEIRSFGDEEKMMECLMVVGLWCAHPDSNARPSIRQAINVLNFEAPLPILPSHLPAPTYDFRPIASSSTSSSTTQSGVASLASNSSNL* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4495826 4498233 - CsaV3_7G007180.1 Csa07g00619 536182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00619 678 SMART serkin_6 357 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00619 678 MobiDBLite consensus disorder prediction 655 678 - -
Csa07g00619 678 Gene3D Phosphorylase Kinase; domain 1 342 433 - -
Csa07g00619 678 SUPERFAMILY Protein kinase-like (PK-like) 341 664 IPR011009 -
Csa07g00619 678 Gene3D Transferase(Phosphotransferase) domain 1 434 650 - -
Csa07g00619 678 Pfam Legume lectin domain 20 254 IPR001220 GO:0030246
Csa07g00619 678 Gene3D - 18 265 - -
Csa07g00619 678 ProSitePatterns Legume lectins alpha-chain signature. 223 232 IPR000985 -
Csa07g00619 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 255 IPR013320 -
Csa07g00619 678 MobiDBLite consensus disorder prediction 264 286 - -
Csa07g00619 678 PANTHER - 10 667 - -
Csa07g00619 678 CDD lectin_legume_LecRK_Arcelin_ConA 21 253 IPR001220 GO:0030246
Csa07g00619 678 Pfam Protein kinase domain 357 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00619 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Csa07g00619 678 ProSitePatterns Protein kinases ATP-binding region signature. 363 386 IPR017441 GO:0005524
Csa07g00619 678 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 10 667 - -
Csa07g00619 678 ProSiteProfiles Protein kinase domain profile. 357 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00619 678 CDD STKc_IRAK 363 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00619 - - - csv:101208779 1282.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00698 Csa-Chr3:6286267 Csa07g00619 Csa-Chr7:4495826 0 dispersed
Csa06g01899 Csa-Chr6:17106830 Csa07g00619 Csa-Chr7:4495826 1.05E-11 dispersed
Csa07g00613 Csa-Chr7:4466391 Csa07g00619 Csa-Chr7:4495826 6.80E-155 dispersed
Csa07g00619 Csa-Chr7:4495826 Csa07g00622 Csa-Chr7:4501633 2.91E-166 proximal
Csa07g00618 Csa-Chr7:4492517 Csa07g00619 Csa-Chr7:4495826 0 tandem
Csa07g00619 Csa-Chr7:4495826 Csa07g00620 Csa-Chr7:4498245 2.64E-10 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g905 . Blo03g00035 Bda06g01133 . . . . . Cmo19g00508 Cmo11g01451 . . . . . Cpe04g00360 Cpe15g00386 Bhi05g00956 . . . . . . . . . . . . . . . . . Lsi03g00681 Csa07g00619 . Cme01g00179 . . . . . . . . . . . Cma11g01676 Cma19g00490 Car11g01167 Car19g00367 . . . . . . . . . Cla09g01596 . . . . . . . . Chy01g00189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78475 PF00069 Pkinase 1.30E-52 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00619 Csa_Chr07 FPKM 0.44401 0.065892 0.298725 0.0 0.84491 0.736503 0.63282 0.363269 0.350008 0.424751