Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00629 ATGAGTTTTGGTACTATGTTGGAGCCGGTTAGTTGTTGCCAGAGCTCCCAGTCCCAGATTTATGGTGCAGTTAAACAAAAGAATCCTTTCAGGGCCTACTCTCATACTGTTCATCAACTTTGTGGACCTTCCTTCAACTTACATTATTCACACTCGAAGAAAGTGGCTGTTCCATCATGCACTTCTAATTACTGGAGGAATGATTATTCTTTAGTCCCTGTACTTTTCCACAATGGTGCTACTACATTAACGTTCAAAGTAGTTGGACAGAATGGGTACAATTGGTCTAATCGTAGGCCTAAACAGAGAGAAAGAATTAGAACGCATGCAGCTCTTGATGTTGCAGCTGCTGTTGACGTCATCAATGATTTAGGATTGGATACATTGACATTCCTAGCTGTGACTGTCGTAGTTGTCCCTTTATTTAGGAGAATTAAGGCTAGCCCTATACTTGGTTTCTTCTTTGCTGGGATTGTACTTAATCAATTTGGCGTGATTAGAAATATTGTAGACGTTAAAGTTTTATCTGAATGGGGAATACTTTTCCTGCTATTTGAGATGGGTTTGGAGCTTTCATTCGCACGTTTAAAGGCTCTTGCAAGGTTTGCTTTTGGCATGGGATTGACACAGGTCATATTGTCTACTATCGCTTTCACAGCATTTGAACTTCCCACAAATGGGGCTGTTGGAACAAAAATTTTGGAGTTCCTTTTTCATGCCAGATCTGACTTGGTTAACATTAGAAGCGTTGATGAAGCTATTGTTATTGGTGCTGCCCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAAAAAGGAGAGCTTGCGACAAGATTTGGCTCTGCGACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCCTGGTCATACTTCCAGTTCTTGAGAGCCAGAATTTGGGCACGGAAAGTATCTGGCCAATGCTCGCACAAGAAAGTTTGAAGGCTTTAGGTGGACTGGGTCTACTGTCCCTTGGTGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTTGCGGAAGCAAGAAGCTCGGAGGCTTTTGTCGCCCTTTGCCTGCTAACAGTTGCTGGCACTTCACTAATCACTCAGAAATTGGGCTTTAGTGATACGCTGGGAGCATTTTTGGCTGGGGCAATATTAGCAGAAACTAATTTCCGAACACAGATTGAAGCAGATATTCGGCCATTTAGGGGCTTGCTGCTCGGGTTATTCTTTGTTACCACAGGGACCTCCATTGATATGCAGCTCTTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCAGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGTCCCCGCGTGGGCCTCACTACTCAAGAAAGTGTAAGAATAGGCTTCCTTCTATCTCAAGGAGGCGAGTTCGGATTTGTAGTCTTTTCACTAGCCAACAGGCTTGGAGTGTTACCACTCGAGTTAAACAAACTGCTCATCATTATTGTTGTCTTGTCAATGGCTCTAACTCCCTTGCTTAATGAAGCTGGACGAAAGGCATCGGAATTCATCAGCGAAAAGTACAAGACAGAGGATAAAGCTGCAGATACGGTGAACTTTGACGCTACTGAACCTGTTGTCATTGTTGGATTTGGACAAATGGGTCAGGTTCTGGCAAATTTCTTATCTACACCTTTGGCATCTGGGTTAGATGGCAATACTCCTGGATGGCCTTATGTAGCGTTTGACATTGATCTTTCTGTAGTGAAGACATCTAGAAAGCTTGGTTTTCCTGTTCTCTATGGAGATGGATCACGACCAGCAGTTTTGCAATCTGCAGGAATTTCTTCACCAAAAGCTGTCATGGTTATGTTTACGGAGAAGAAGGCAACAATCGATGCTGTTCAAAAGCTTCGGCTTGCGTTCCCAGCTATCCCAATTTATGCCCGAGCTAAGGATGTGGTGCATCTATTAGATTTAAAGACCGCAGGTGCAACGGATGCTATTTTGGAAGATGCTGAGACTAGTTTACAACTTGGATCAAAGCTTTTGAAAGGGCTTGGAGTCATGTCAGACCAAGTGTCTTTCCTCAGTCAAATGGTTCGAAACTCTATGGAAATACAAGCTCAAGATGCAATCGACAAATCCAATGAGCAAGAGTTAGAGATTATGAAACCGCTGCAGATACGTGTCAAGGACTCCATCGAGTCCCCCGAGAACGAACTGTCGAGACTGAACCTGAAAGATAAAACTCAAATCTTAAACGGAAAAGAGGTAGATCAAATGAAACAAGGTACTGTTTTCGAGAAGGCTGAAGATTTAGATGGAAATGGAGTGTTATACTGTGACCTTGATACAGAGAACAACTTTTTAGAGGAAAATGTGGTAGAGCCACCAACAACCCACATAGCAGCCACTGATGGTGTAGAGAAGTGA 2439 42.85 MSFGTMLEPVSCCQSSQSQIYGAVKQKNPFRAYSHTVHQLCGPSFNLHYSHSKKVAVPSCTSNYWRNDYSLVPVLFHNGATTLTFKVVGQNGYNWSNRRPKQRERIRTHAALDVAAAVDVINDLGLDTLTFLAVTVVVVPLFRRIKASPILGFFFAGIVLNQFGVIRNIVDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPTNGAVGTKILEFLFHARSDLVNIRSVDEAIVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDMQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISEKYKTEDKAADTVNFDATEPVVIVGFGQMGQVLANFLSTPLASGLDGNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIDAVQKLRLAFPAIPIYARAKDVVHLLDLKTAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSQMVRNSMEIQAQDAIDKSNEQELEIMKPLQIRVKDSIESPENELSRLNLKDKTQILNGKEVDQMKQGTVFEKAEDLDGNGVLYCDLDTENNFLEENVVEPPTTHIAATDGVEK* 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4555610 4565648 - CsaV3_7G007280.1 Csa07g00629 536192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00629 812 Pfam Sodium/hydrogen exchanger family 131 515 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Csa07g00629 812 Gene3D - 546 716 - -
Csa07g00629 812 ProSiteProfiles RCK N-terminal domain profile. 546 678 IPR003148 GO:0006813
Csa07g00629 812 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 81 756 - -
Csa07g00629 812 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 546 684 IPR036291 -
Csa07g00629 812 Pfam TrkA-N domain 547 670 IPR003148 GO:0006813
Csa07g00629 812 Gene3D - 123 523 IPR038770 -
Csa07g00629 812 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 81 756 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00909 Csa-Chr3:7523616 Csa07g00629 Csa-Chr7:4555610 2.85E-100 dispersed
Csa03g01643 Csa-Chr3:12274677 Csa07g00629 Csa-Chr7:4555610 3.34E-32 dispersed
Csa07g00629 Csa-Chr7:4555610 Csa02g01615 Csa-Chr2:15210953 2.69E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00629 - - csv:101209266 1479.92