Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00643 ATGGCGTCTGCTGTTTTAGCGAATCACGAACCCAGTTGGCCTACGAGCAAACGCAACGGGAGTGGAGGAGGAACGTTTATGGCGAGAGTTCCGTTCTCAAACCCTAAATCTAAATCTAATATGAAAAAGAGGAAAACTAATGGTGAAATTAACAACTTCCATCAGATGGGTGAAGAAATGGGCAACGTGACAACTCTGTCTCCCTCGGATAATGGGTCTTCCATTGATCGTTACCATGGATCTTCGAACTTCGAGTACAGCCAATATGTGAGTTTCAATATAACTTCGTGTTCTGGGAGGGATTTGTTTGAGCTGAGGAAGCGCTTACTGGGAGAACTTGAACAAGTTAGACGAATCAAGAGTCGTATTGAATCTGGGAACATTAGTTCTGGACCTAATTATCTCAAAAAATCTTCTAAGACGAAGGGACTGAACAAGCGGCCGAAGGTGCTACCTAGTTTTGGCAAAGATTTGCAGGTTCCAAATTCGTTTGAAGTTGGGAATCTGATGAAGACTTGCGCTCAAATCTTGAACAAATTGATGAAGCAAAAGTATGGGTTGATCTTTAATAAACCTGTGGATGTGGTTGGGTTGGGTCTTCATGACTATTATGATATTATTAAGCATCCTATGGATTTAGGGACTGTGAAATCTACGCTGTCTAAGAATTTATACGACTCACCTTTGGATTTTGCTGAAGATGTTAGGCTAACATTTAACAATGCCATGAGGTACAACCCCAAGGGTCATGAAGTTCATATATTGGCTGAACAGTGGTTAGTGAAATTTGAGGAAATGTTTCTTCCTGTTAGTCGGAAGCTGGGTGCACTGAAGCAGCCAGATCCCTATGAAGAGGAATTGCAATCCAGTTCATGGAATCATGTTGAGGAGGTGGAGAATGTGAATTTCAACTCAAATGGGAACAAACCCGTAGAAGTGGTGGTGCCGTCGAGCTTGACGAAGCCTCCTTCAGTTCAATCACCAGTGAGAACCCCATCACCAGTGAGAGCACCTCAGGTGAAGCCTGTAAAGCAGCCAAAGCCGAAGGCAAAGGATCCCAACAAAAGGGATATGAGTTTAGAGGAGAAACACAGATTGGGAATTGGATTGCAGGGCTTGCCTCCTGAGAAGATGGATCAGGTGATACAGATTGTGAAGAAGAGAAGTGGACATTTGAGACAGGATGGGGATGAGATTGAGCTTGACATTGAAGCAGTCGATACAGAGACCCTTTGGGAACTTGACCGACTGGTGACGAATTGGAAGAAAATGATGAGCAAGGTCAAGCGGCAAGCTCTCATCAATGACAATACAAATGCAGATTCGAATAAAGAGAATAATGAGATATCATCTGTAAATGAGATGATGAATGAGGTTAAAACAGAGGCGAAGAAGCTTAGAAAAGGGGATGTGGGTGAAGAAGACGTGGACATTGGGGATGAGGTGATACCAATGGGTGGTTTCCCTCCTGTTGAAATTGAAAGAGATGCAGCTGCTCGTGCTAGTAGTAGTTCTGATAGCTCTAGTAGTTCAGGAAGTGATGATTCTTCCTCTTCTAGTGGTTCTGATTCAGATGGGAGCTCCTCCGATAGTGATTCAGATGGTGATGGTCAATCATAG 1620 43.46 MASAVLANHEPSWPTSKRNGSGGGTFMARVPFSNPKSKSNMKKRKTNGEINNFHQMGEEMGNVTTLSPSDNGSSIDRYHGSSNFEYSQYVSFNITSCSGRDLFELRKRLLGELEQVRRIKSRIESGNISSGPNYLKKSSKTKGLNKRPKVLPSFGKDLQVPNSFEVGNLMKTCAQILNKLMKQKYGLIFNKPVDVVGLGLHDYYDIIKHPMDLGTVKSTLSKNLYDSPLDFAEDVRLTFNNAMRYNPKGHEVHILAEQWLVKFEEMFLPVSRKLGALKQPDPYEEELQSSSWNHVEEVENVNFNSNGNKPVEVVVPSSLTKPPSVQSPVRTPSPVRAPQVKPVKQPKPKAKDPNKRDMSLEEKHRLGIGLQGLPPEKMDQVIQIVKKRSGHLRQDGDEIELDIEAVDTETLWELDRLVTNWKKMMSKVKRQALINDNTNADSNKENNEISSVNEMMNEVKTEAKKLRKGDVGEEDVDIGDEVIPMGGFPPVEIERDAAARASSSSDSSSSSGSDDSSSSSGSDSDGSSSDSDSDGDGQS* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4626201 4629217 + CsaV3_7G007420.1 Csa07g00643 536206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00643 539 Pfam Bromodomain 173 257 IPR001487 GO:0005515
Csa07g00643 539 PANTHER OSJNBA0053K19.4 PROTEIN 71 536 - -
Csa07g00643 539 Pfam Bromodomain extra-terminal - transcription regulation 358 419 IPR027353 -
Csa07g00643 539 ProSiteProfiles NET domain profile. 348 429 IPR027353 -
Csa07g00643 539 ProSiteProfiles Bromodomain profile. 181 253 IPR001487 GO:0005515
Csa07g00643 539 MobiDBLite consensus disorder prediction 303 359 - -
Csa07g00643 539 Gene3D - 157 274 IPR036427 GO:0005515
Csa07g00643 539 MobiDBLite consensus disorder prediction 464 539 - -
Csa07g00643 539 SUPERFAMILY Bromodomain 164 267 IPR036427 GO:0005515
Csa07g00643 539 PRINTS Bromodomain signature 184 197 IPR001487 GO:0005515
Csa07g00643 539 PRINTS Bromodomain signature 200 216 IPR001487 GO:0005515
Csa07g00643 539 PRINTS Bromodomain signature 216 234 IPR001487 GO:0005515
Csa07g00643 539 PRINTS Bromodomain signature 234 253 IPR001487 GO:0005515
Csa07g00643 539 PANTHER TRANSCRIPTION FACTOR GTE2 71 536 - -
Csa07g00643 539 MobiDBLite consensus disorder prediction 303 333 - -
Csa07g00643 539 Gene3D - 351 428 IPR038336 -
Csa07g00643 539 MobiDBLite consensus disorder prediction 345 359 - -
Csa07g00643 539 SMART bromo_6 162 272 IPR001487 GO:0005515
Csa07g00643 539 MobiDBLite consensus disorder prediction 1 44 - -
Csa07g00643 539 MobiDBLite consensus disorder prediction 500 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00643 - - - csv:101209352 963.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01168 Csa-Chr4:10111427 Csa07g00643 Csa-Chr7:4626201 0 dispersed
Csa06g02375 Csa-Chr6:21278927 Csa07g00643 Csa-Chr7:4626201 6.82E-76 dispersed
Csa06g03741 Csa-Chr6:29842298 Csa07g00643 Csa-Chr7:4626201 1.32E-27 dispersed
Csa07g00643 Csa-Chr7:4626201 Csa01g00073 Csa-Chr1:433234 1.27E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00643 Csa_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0