Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00644 ATGGGTAGTAAAAAGAAAGATTCTAACCCCACAGACGAAGTGGAGATTCAGAAAGATACATCGATGGATGGCGTTGGCGCTGTTGATTCAAAATCCTTGAAGAGAAAAATGAAGGACAAAGAGAAAGATGCTGAACTGGAAAAGGGGGATGTTGGTATTCCCTCTTCTACCTTTCCCAATTCTGAGAAACCAATGGAGAGGAAAAAGAAAAGAAAAACATTTGACAAAGAAAGAAAGCGAGCTACTTCAGAACAGGAAAAACAAATAATTGCTAACTTTAAAGCCGAGGATACTAAGCCATCTTCTGTCTCTGTTTCAAGTACTGGTCTCCCTGAATTTCATATCAGTGTTTTTAAGGACTTGGCATCTGCTGACATTTTGGTGAGAGAATCAGCTGCAGAAGCTTTGGCAACTGAGCTGCTAAAGGTTCAAGAAGCATATGACAAGCTTGAAAATAAGGATCTGGTTGAGGGTGGGTTAAAACTGGAAGCTGAGAAGGATGATGGCTTAGATAATTGTGCACCATCTGTGAGATATGCTGTACGTAGACTGATTCGTGGTGTGTCTTCATCAAGAGAGTGTGCTAGACAGGGTTTTGCCTTAGGATTGACTGCATTGATAAGTACACAGCCCAACATCAAGGTGGATTCATTGCTGAAACTCATTGTTAATATTTTAGAGGTTTCTTCATCAATGAAAGGCCAGGAAGCAAGGGACTGTCTTTTGGGTCGATTGTTTGCTTATGGGGCTCTTGTGCACTCAGGAAGACTAACTGAAGAACGCGCTTCTGATAAAAGCACTTCACATGTGAAGGAAATCACCGATGTTCTTATATCTCTTGCAGCTAAAAAACGTTATCTTCAAGAACCTGCTGTCTCAATTATTTTAGAATTGATAGAAAAGTTAACACCTGAGGTGTTGAATCAAGTGCTTGAAGCTTCTGGAATTCGAGAGTGGTTTGAAGCAGCTACTGAAGTCGGGAATCCGGATGCACTGCTGTTGGCCTTAAAATTACGAGAAAAAATTTCTGCTGATTGTTCAATATTTGCTAAACTTTTACCAAATCCATTCACTCCTAGTAGATTTTTTTCTGTTGATCATCTGTCATCTCTAGCTAACTGTCTCAAGGAGACTACTTTTTGCCAGCCCAGAGTTCACAGCTTATGGCCTGTTCTGGTAAACATTTTGTTGCCTGATACAGTTTTGCAAGCTCAAGATTCACTGTCTGTTACAGCCTCATTGAAGAAGCATAAAAAGAATCGTAAAAGTGGCTCTTCCGAAGAAGAAATTCTGATAAACTTCCAAAATTTTTTTGAAGTTATAATTGAAGGAGCACTTCTGCTATCTTCTCATGACCGTAAGCACTTGGTGTTTGACGTTCTACTTCTTCTCCTGCCAAGACTGCCAACAATATTTGTCCCCACTATGCTTTCATATAAAGTTGTTCAGTGCCTGATGGACATACTTTCAACAAAGGATTCTTGGTTGTATAAAGTTGGGCAGAACTTTGTAAAAGAATTATCTGAATGGGCACGGCATGACGATGGCAGAAAAGTTGCTGTCATTATTGCTTTACAGAAGCACAGCAGTGTCAAGTTTGATAATATTACACGAACAAAAGCTGTTCAAAACCTGATTTCTGAGTTTAAGACAGAAGCAGGTTGCTTTCTGTTTATTCAGAACTTGATGAGCATGTTTGTGGATGAAAGTCAAACATCTGAGGAACCTTCAGATCAGAGTCAAACAACTGATGACAACTCAGAGGTTGGTTCGGTTGAGGACAAGGACTCAACAGGAACAATTGGGAACTCTGACTTTTTGAGAACTTGGATTATAGAATCACTACCATGCATGTTGAAACACTTGAAGCTGGAACCTGAGGCAAAATTCCGGGTGCAGAAAGAAATTTTGAAATTTCTAGCTGTTCAGGGTTTGTTCACCGCATCCCTTGGCACAGAAGTGACCTCTTTCGAACTACAGGAGAAATTCAAGTGGCCAAAAGCTCCCACATCTAGTGCTCTTTGTATGCTTTGTATTGAAAAACTGCAGTTGTTACTGGCGAATGCTCAAAAGGGAGAGGGATCTCATGGTTTTGTAAATGGTCTTGAGCCAAATGACCTTGGCTCTTATTTTATGAGGTTTCTTGGTACATTACGCAACATCCCTTCAGTTTCTCTATTCCGTCGCCTGAGTGATGAGGATGAAGATGCATTCAAAAAACTGCAAGAGATGGAAACCAGGTTATGGAGAGAGGAAAGGAATTACGGGTTAAGTGCTGATGCAAACAAATTACATGCACTAAGGTACTTGCTCATCCAGTTGCTTTTGCAAGTGCTCCTTCGCCCAGAGGAATTTACCGAAGCTGCAACTGAATTAATTATATGTTGTAAGAAAGCATTTTCGTCTGCTGATCTACTAGGGTCCTCTGGAGATGATGAGTTGGATGGTGATGGAACAATGCAGTTAATGGATGTTCTTGTCGACACATTGCTTTCATTGCTACCACAGTCATCAGCACCCATGAGGTCTGCCATTGAGCAGGTTTTCAAGTATTTCTGTAGTGATATCACTGATGATGGGCTGATGAGAATGTTGAGGGTTGTCAAGAAAAATCTGAAACCTTCTAGACATCAGAATGCAGAGGATGACGATGATGATGAGGACGAAGATTTTCTTGATGTTGAAGAAGAAGAGGAAATTAATCAAGATGAAACTGTTGACACAGGTGACAGCGATGAACATACTGATGAATCTGAAGCCATAGATAGAGTTGGAGAAGTAGGGCCAAAACTTTCTGACGGTTCTGATGATTCTGAATCCGATGGAGGAATGGACGATGATGCGATGTTTCGAATGGATTCTTATCTTGCCCAAATCTTCAAAGAGCGAAAAAATCAGGCTGGGAGCGACACTGCTCAGTCTCAGCTTATGTTATTCAAGCTTCGTGTTCTGTCACTTCTGGAAATTTACTTACATGAAAATCCAGGTAAGCCGCATGTTTTGTTGGTGTTCTCAAACTTGGCTCAGGTATTAGTTAACCCACATACAGAAGGTAGCGAACAGCTTGAACAGCGTATATGGGGAATTTTGCAAAAGAAGATTTTCAAAGCAAAAGACTATCCAAAGGGAGAAGCAGTTCAAATGTCGACGCTTGAAAATTTGCTGGAGAAGAACCTAAAGTTGGCGTCAAAACCTAAGAAAAAGAAATCTGCTGCAAATGTATCAAAAAAGAAGCAGTTAGCATCAAAGAATCATTACAAGATGATTGATTCCCTGGGTCAGAATTCAGCATATTGGATTATGAAGATTATCGATGCAAAAAAATTGTCCAACCGTGACCTACAGAAAGTATTTGATATTTTTGATAGAGTTTTGGTGGATTATTTTCATAAGAGGTCTCAGATAAAGATCGAATTTCTGAAAGAGATGATTAGAAGAAAGCCATGGATTGGGCAGCACCTTTACAGTTCCGTTCTGGAAAGATGTGTCAGTACAAATTCAGAGTTTCGGCGAATTGAAGGACTAGATCTAATAACTGAAACGATAAAATCATCAATGTCCTCTGAAAATGGGCATCATGTTGCAAAAGAACTGATGGAGAAATTCCTTCATGAACTATGCAATTTGATAAAGGAGTTACTGACGCATATGCCAGAAAAGCAGGCTCGGCGATCAGATATAAGAAAGTTTTGTTACAAGATTTTTCATTTAGTTTCCTCTCTTAAAATCAACAAGTCTTTTCTTTCAAGCTTGGCTCCTGAAGCTGTAGCTTTATGTGAATCTCAACTTGGCGACCAGTTCGGTAGATTGAAGCTTCGAGAATGA 3825 40.0 MGSKKKDSNPTDEVEIQKDTSMDGVGAVDSKSLKRKMKDKEKDAELEKGDVGIPSSTFPNSEKPMERKKKRKTFDKERKRATSEQEKQIIANFKAEDTKPSSVSVSSTGLPEFHISVFKDLASADILVRESAAEALATELLKVQEAYDKLENKDLVEGGLKLEAEKDDGLDNCAPSVRYAVRRLIRGVSSSRECARQGFALGLTALISTQPNIKVDSLLKLIVNILEVSSSMKGQEARDCLLGRLFAYGALVHSGRLTEERASDKSTSHVKEITDVLISLAAKKRYLQEPAVSIILELIEKLTPEVLNQVLEASGIREWFEAATEVGNPDALLLALKLREKISADCSIFAKLLPNPFTPSRFFSVDHLSSLANCLKETTFCQPRVHSLWPVLVNILLPDTVLQAQDSLSVTASLKKHKKNRKSGSSEEEILINFQNFFEVIIEGALLLSSHDRKHLVFDVLLLLLPRLPTIFVPTMLSYKVVQCLMDILSTKDSWLYKVGQNFVKELSEWARHDDGRKVAVIIALQKHSSVKFDNITRTKAVQNLISEFKTEAGCFLFIQNLMSMFVDESQTSEEPSDQSQTTDDNSEVGSVEDKDSTGTIGNSDFLRTWIIESLPCMLKHLKLEPEAKFRVQKEILKFLAVQGLFTASLGTEVTSFELQEKFKWPKAPTSSALCMLCIEKLQLLLANAQKGEGSHGFVNGLEPNDLGSYFMRFLGTLRNIPSVSLFRRLSDEDEDAFKKLQEMETRLWREERNYGLSADANKLHALRYLLIQLLLQVLLRPEEFTEAATELIICCKKAFSSADLLGSSGDDELDGDGTMQLMDVLVDTLLSLLPQSSAPMRSAIEQVFKYFCSDITDDGLMRMLRVVKKNLKPSRHQNAEDDDDDEDEDFLDVEEEEEINQDETVDTGDSDEHTDESEAIDRVGEVGPKLSDGSDDSESDGGMDDDAMFRMDSYLAQIFKERKNQAGSDTAQSQLMLFKLRVLSLLEIYLHENPGKPHVLLVFSNLAQVLVNPHTEGSEQLEQRIWGILQKKIFKAKDYPKGEAVQMSTLENLLEKNLKLASKPKKKKSAANVSKKKQLASKNHYKMIDSLGQNSAYWIMKIIDAKKLSNRDLQKVFDIFDRVLVDYFHKRSQIKIEFLKEMIRRKPWIGQHLYSSVLERCVSTNSEFRRIEGLDLITETIKSSMSSENGHHVAKELMEKFLHELCNLIKELLTHMPEKQARRSDIRKFCYKIFHLVSSLKINKSFLSSLAPEAVALCESQLGDQFGRLKLRE* 1275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4629233 4639229 - CsaV3_7G007430.1 Csa07g00644 536207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00644 1274 Pfam DNA polymerase phi 179 991 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Csa07g00644 1274 MobiDBLite consensus disorder prediction 570 600 - -
Csa07g00644 1274 MobiDBLite consensus disorder prediction 875 947 - -
Csa07g00644 1274 MobiDBLite consensus disorder prediction 881 915 - -
Csa07g00644 1274 MobiDBLite consensus disorder prediction 62 85 - -
Csa07g00644 1274 MobiDBLite consensus disorder prediction 1 19 - -
Csa07g00644 1274 ProSitePatterns EF-hand calcium-binding domain. 594 606 IPR018247 -
Csa07g00644 1274 MobiDBLite consensus disorder prediction 29 49 - -
Csa07g00644 1274 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 98 1271 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Csa07g00644 1274 MobiDBLite consensus disorder prediction 1 85 - -
Csa07g00644 1274 SUPERFAMILY ARM repeat 116 899 IPR016024 -
Csa07g00644 1274 MobiDBLite consensus disorder prediction 916 937 - -
Csa07g00644 1274 Coils Coil 133 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00644 K02331 POL5, MYBBP1A; DNA polymerase phi [EC:2.7.7.7] - csv:101209511 2330.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g866 . . . . . Bpe12g00719 . . Cmo19g00510 . . . . . . . Cpe15g00390 . . . . . . . . . . . . . . . . . . . Csa07g00644 . Cme01g00159 . Blo13g00201 Bda15g00482 . . . . Bma08g00031 . . . . . . Car19g00369 . . . . . . . . . Cla09g01618 Cam09g1534 Cec09g1780 Cco09g1863 . . Cre01g0781 . . Chy01g00167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007466 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00644 Csa_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0