Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00647 ATGGAGAAATCTTCTATGGTGGTTTTTTCTGAGATGGGAATGGAGGATAATGGCTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGATCTTGGTTTGCACCCATTAGCAGCTGCTTTTGGGGAGAATTTGCAGCATTCTTATGATCAATCAAATATTGATCAGAAGGCTTCTTTAAACCATTCTCACAATGCCATACTTGGGTATATGAAACAGCTCAAGAGTGATGGGTGGAGTTCATACCAAACAACTAATCATTTACCGAACTCACAAGTCGTTGCTTACCCAACTGTATCTGTTTCGGCTTCTAACTACATGAACCAAATGGATTTCTCTAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATTAGCAACCTCCCTTCTGATATGTTGATTTCTCAGGACTCATTAGCCCATCAAAGCCACACAACCAAGTCGAATCGTGGAACAAGAAGTCCCTCTAGAAACAGTAGAATCCCCCAGGCTCAAGATCATATTCTTGCAGAGCGGAGACGACGAGAGAAGCTCAGCCAGCGATTTATTGCTTTGTCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATTAAGTACCTGAAACAACTTCAAGAGAAAGTGAAGATACTAGAGGAACAAACCCGCAGGAAAGACATTGAGTCCGTGGTATTTGTCAAGAAATCCCATGTTTTCCCTGATGGAAATGACACATCAAAAGAAGAGGATGAGCCACTTCCCGAAATTGAAGCAAGAATTTGCGACAAAAATGTCCTTATAAGAATACACTGTGAAAAAAAGAAAGATATCATAGAGAAAACAATAGCTGAAATTGAAAATTTGCACCTTACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTCGCTCTCGACATAACTATTATCGCACAGATGGATAATGAATTCTGTTTAACATTAAAGGACCTAGTGAAGAATTTGCAATCGACTTTGCGCTCGTTTTAA 1005 40.7 MEKSSMVVFSEMGMEDNGFVNQWHKSSMDDLGLHPLAAAFGENLQHSYDQSNIDQKASLNHSHNAILGYMKQLKSDGWSSYQTTNHLPNSQVVAYPTVSVSASNYMNQMDFSRPKEEVVCPQSISNLPSDMLISQDSLAHQSHTTKSNRGTRSPSRNSRIPQAQDHILAERRRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSHVFPDGNDTSKEEDEPLPEIEARICDKNVLIRIHCEKKKDIIEKTIAEIENLHLTIVNSSVMSFGSLALDITIIAQMDNEFCLTLKDLVKNLQSTLRSF* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4647975 4650800 + CsaV3_7G007460.1 Csa07g00647 536210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00647 334 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 4 334 - -
Csa07g00647 334 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Csa07g00647 334 MobiDBLite consensus disorder prediction 138 164 - -
Csa07g00647 334 Gene3D - 159 233 IPR036638 GO:0046983
Csa07g00647 334 PANTHER BHLH TRANSCRIPTION FACTOR 4 334 - -
Csa07g00647 334 CDD bHLH_AtNAI1_like 163 235 - -
Csa07g00647 334 MobiDBLite consensus disorder prediction 138 162 - -
Csa07g00647 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983
Csa07g00647 334 SMART finulus 167 216 IPR011598 GO:0046983
Csa07g00647 334 Coils Coil 200 227 - -
Csa07g00647 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00647 - - - csv:101209844 638.262
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03071 Csa-Chr6:26373287 Csa07g00647 Csa-Chr7:4647975 6.97E-59 dispersed
Csa06g03072 Csa-Chr6:26382822 Csa07g00647 Csa-Chr7:4647975 3.14E-50 dispersed
Csa07g00647 Csa-Chr7:4647975 Csa03g04609 Csa-Chr3:40071324 1.38E-15 dispersed
Csa07g00647 Csa-Chr7:4647975 Csa03g00171 Csa-Chr3:1295970 1.02E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g826 . . . . . . . . Cmo19g00526 Cmo11g01441 . . . . Sed10g1926 Cpe04g00344 Cpe15g00409 Bhi05g00987 Tan02g1087 Cmetu01g1268 Lac12g0126 Hepe02g0676 . . Cla02g00729 Cam02g0775 Cec02g0773 Cco02g0802 Clacu02g0770 Cmu02g0763 Cre02g1077 . Cone8ag1047 . . Lsi03g00644 Csa07g00647 . Cme01g00155 . . . . . . . . . . . . Cma19g00513 Car11g01157 Car19g00388 . . . . . . . . . . . . . . . . . . Chy01g00164 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000301 3 5 4 3 4 4 5 4 4 4 4 4 5 4 4 7 4 9 5 4 4 5 3 5 5 4 4 11 7 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32285 PF00010 HLH 2.40E-10 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00647 Csa_Chr07 FPKM 11.753318 12.899648 11.444524 12.686602 10.92831 13.933684 11.353353 16.53915 17.035536 15.959127