Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00651 ATGACTAATTCACCATTTTCCTCCGGCCACCGTCCTCTTCTGCTGGCTCACTTCCTCCTCCTTTTTCTCTTCGTTTCTTCATTTTCCCTCTCCTATGGTGATGAACTTCAACCACTTTTAGACCTCAAATCTGCCTTTTCTTCTTCTTCTTCTTCTTCTTTGGCTTTTAGCTCTTGGATTAAAGGGAAGGATGTTTGCAGCAGCTTCCATGGCATTGTATGTAATTCCAATGGCTTTGTAGTAGAAATCAATCTCCCTGCTCAGAACTTGTCTAGGATTATTCCTTTTGATTCTATTTGCTCTTTGAAATCTCTTGAGAAGCTGTCTTTTGGGTTTAATTTTTTGTATGGGAAGGTTAGTGATGGTTTGAGAAACTGTTCTAAGTTGAAGTATTTGGATTTGGGTGAGAATTTCTTTTCTGGTGAAGTACCTGATTTGTCTTCTTTAGTGGGATTGAGATTCCTGAGTTTGAATAACAGTGGGTTTTCTGGAGATTTTCCATGGAAATCTCTTGTTAATCTTACTGATTTGGAGTTCTTGAGCCTTGGAGACAATACATTTAACCCAACAACTTCATTTCCATTAGCGATTCTTGAGCTTAAGAACCTTCATTGGCTTTACCTCTCTAACTGCACCATTTATGGTGAAATCCCATCTAGGATTGGGAACTTGTCTTTGCTTGAGAATCTTGAACTCTCACAAAATAAACTCACTGGTGAAATTCCTTATGAGATTGTGAACTTGAAGAATCTATGGCAGTTGGAGTTACATGAGAATTCCTTGACCGGGAAGCTACCAGTCGGGCTCGGTAACCTCACTGGACTAAGGAACTTTGATGCCTCATCTAATAATCTTGAAGGTGATTTAATGGAGTTGAGGTCCCTGACCAATTTGAAGTCCTTGCAGCTCTTTGAGAATCGATTTTCCGGTACGATCCCAGAGGAGTTTGGGGACTTTAAGGACCTTATTGAGCTCTCTCTTTACCGAAACAACCTTATTGGCAGTCTCCCTCAAAGAATTGGATCTTGGGCAGCCTTCGTTTTCATTGACGTTTCAGAGAATTTCTTGTCTGGACCTATACCTCCAGACATGTGCAAGCAGGGCAGAATGACTGATCTATTGATGCTACAAAACAATTTCATTGGTGGAATCCCAGAAAGCTACACGAATTGTAAATCTTTGAATCGTTTTCGTGTAAATAATAACTCTCTTTCGGGTGTTGTTCCTACTGGGATTTGGAGCCTGCCAAATCTTAGCATCATTGATCTTTCAATGAATCAGTTTGAAGGTCCTGTGACTTCCGATATTGGTAAAGCAAAAGCTCTTGCTCAGTTATTCTTATCGAATAACCGGTTTTCGGGTAACTTACCGGCTGAGTTAGGCGAAGCATCATCCTTAGTCTCAATCAAGCTCGATTCGAACCAATTTGTTGGTCCAATACCTGAATCACTTGGCAAGTTGAAGGACTTAAGCAGCCTTGCTTTGAATGACAACAAATTTTCCGGCAATATACCTAGCTCACTAGGCTCTTGCACTTCTCTTTCTACCATAGATTTATCTATGAATTCATTCTCCGGGCGTATTTCAGAGAATCTTGGTTACTTGCCAATTCTTAACTCCTTGAATCTGTCTAGCAATGAACTTTCAGGTGAAATTCCAACTAGTTTCTCAAAGTTGAAGCTAAGCAGTTTCGACCTGTCTAATAACAGGTTAATTGGCCAAGTACCTGATTCGCTTGCAATCCAAGCCTTTGATGAAAGTTTCATGGGAAATCCTGGCTTGTGTAGTGAGTCTATTAAATACTTGAGTTCATGTTCGCCAACCTCTAGATCATCCTCCAGCCATCTCACCTCGTTGTTGTCATGTACCATTGCTGGAATTCTACTGTTGATTGTGTCCTTCTTGTGTTTGTTGTTTGTGAAATGGAAACGTAACAAGGATGGTAAGCATTTACTGAATTCCAAATCATGGGATATGAAGCTATTTCACATGGTGCGCTTCACGGAAAAGGAAATCATAGATTCAATCAATTCTCACAACTTGATAGGAAAAGGAGGATCTGGAAATGTGTACAAAGTCGTACTAAGTAACGGCAAAGAACTCGCCGTGAAACATATATGGCAGTCGAGCTCTAGAGACCAAGCGAACAGCGGGACTAGTGCAACCATGTTAACTAAAAGAAAGACCAGGTCATCCGAATATGATGCAGAAGTAGCTACATTGAGTTCAGTGAGGCATAACAACGTGGTGAAATTATACTGTAGCATTTCGAGTGAGGACAGTAACCTGCTGGTCTACGAGTACTTACCGAATGGAAGTTTATGGGATCAGTTGCATACTAGCAGGAAGATTGAGATGGGATGGCAAATAAGGTACGCGATAGCTGTTGGAGCAGCAAGGGGCCTTGAGTATTTGCATCATGGGTGTGACCGACCTGTCATTCACCGAGATGTAAAGTCAAGTAATATTTTGTTGGATAGTGATTGGAAACCTAGGATTGCAGATTTCGGGTTAGCAAAGATTCTGCAGGATGGCAATGGCCATGGGGTTGGAGATTCATCTCATGTCATTGCTGGGACACTCGGTTATATAGCCCCTGAATATGCATACACGTGCAAGATAAACGAGAAGAGTGACGTTTACAGCTTTGGAGTTGTTCTAATGGAACTAGCAACAGGAAAGCAGCCCAATGAGGCAGAGTTTGGGGAGAACAAAGATATTGTACAATGGGCACACAGCAGAATGAGAGAACTAAAAGGTAATCTGAAAGAGATGGTAGATCCTAGCATATCAGAGGCTCAGGTGGAGAACGCAGTCAAAGTGCTAAGGATCGCACTTCGCTGCACGGCTAAGATTCCATCTACAAGGCCCTCCATGAGAATGGTGGTTCATATGCTTGAAGAGGCTGAACCTTGTAACTTTATTGACATTGTTGTCAAGAAAGAATGTGAAAACTAA 2958 41.48 MTNSPFSSGHRPLLLAHFLLLFLFVSSFSLSYGDELQPLLDLKSAFSSSSSSSLAFSSWIKGKDVCSSFHGIVCNSNGFVVEINLPAQNLSRIIPFDSICSLKSLEKLSFGFNFLYGKVSDGLRNCSKLKYLDLGENFFSGEVPDLSSLVGLRFLSLNNSGFSGDFPWKSLVNLTDLEFLSLGDNTFNPTTSFPLAILELKNLHWLYLSNCTIYGEIPSRIGNLSLLENLELSQNKLTGEIPYEIVNLKNLWQLELHENSLTGKLPVGLGNLTGLRNFDASSNNLEGDLMELRSLTNLKSLQLFENRFSGTIPEEFGDFKDLIELSLYRNNLIGSLPQRIGSWAAFVFIDVSENFLSGPIPPDMCKQGRMTDLLMLQNNFIGGIPESYTNCKSLNRFRVNNNSLSGVVPTGIWSLPNLSIIDLSMNQFEGPVTSDIGKAKALAQLFLSNNRFSGNLPAELGEASSLVSIKLDSNQFVGPIPESLGKLKDLSSLALNDNKFSGNIPSSLGSCTSLSTIDLSMNSFSGRISENLGYLPILNSLNLSSNELSGEIPTSFSKLKLSSFDLSNNRLIGQVPDSLAIQAFDESFMGNPGLCSESIKYLSSCSPTSRSSSSHLTSLLSCTIAGILLLIVSFLCLLFVKWKRNKDGKHLLNSKSWDMKLFHMVRFTEKEIIDSINSHNLIGKGGSGNVYKVVLSNGKELAVKHIWQSSSRDQANSGTSATMLTKRKTRSSEYDAEVATLSSVRHNNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTSRKIEMGWQIRYAIAVGAARGLEYLHHGCDRPVIHRDVKSSNILLDSDWKPRIADFGLAKILQDGNGHGVGDSSHVIAGTLGYIAPEYAYTCKINEKSDVYSFGVVLMELATGKQPNEAEFGENKDIVQWAHSRMRELKGNLKEMVDPSISEAQVENAVKVLRIALRCTAKIPSTRPSMRMVVHMLEEAEPCNFIDIVVKKECEN* 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4672994 4676933 + CsaV3_7G007500.1 Csa07g00651 536214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00651 985 SUPERFAMILY L domain-like 194 431 - -
Csa07g00651 985 Pfam Leucine rich repeat N-terminal domain 34 75 IPR013210 -
Csa07g00651 985 SMART serkin_6 676 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00651 985 Gene3D Phosphorylase Kinase; domain 1 660 768 - -
Csa07g00651 985 Gene3D Ribonuclease Inhibitor 191 344 IPR032675 -
Csa07g00651 985 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 977 - -
Csa07g00651 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Csa07g00651 985 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 17 977 - -
Csa07g00651 985 Gene3D Ribonuclease Inhibitor 347 613 IPR032675 -
Csa07g00651 985 SUPERFAMILY Protein kinase-like (PK-like) 656 967 IPR011009 -
Csa07g00651 985 SUPERFAMILY L domain-like 375 579 - -
Csa07g00651 985 Gene3D Ribonuclease Inhibitor 33 190 IPR032675 -
Csa07g00651 985 SUPERFAMILY L domain-like 47 203 - -
Csa07g00651 985 ProSiteProfiles Protein kinase domain profile. 676 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g00651 985 ProSitePatterns Protein kinases ATP-binding region signature. 682 704 IPR017441 GO:0005524
Csa07g00651 985 Gene3D Transferase(Phosphotransferase) domain 1 769 978 - -
Csa07g00651 985 Pfam Protein kinase domain 679 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04527 Csa-Chr3:39472827 Csa07g00651 Csa-Chr7:4672994 0 dispersed
Csa06g00469 Csa-Chr6:3978872 Csa07g00651 Csa-Chr7:4672994 0 dispersed
Csa07g00312 Csa-Chr7:2331519 Csa07g00651 Csa-Chr7:4672994 0 dispersed
Csa07g00651 Csa-Chr7:4672994 Csa03g00702 Csa-Chr3:6319874 0 dispersed
Csa07g00651 Csa-Chr7:4672994 Csa03g04526 Csa-Chr3:39463518 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78477 PF00069 Pkinase 4.10E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00651 - - csv:101210252 1869.36