Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00652 ATGGACGAGAATACTCAAGCTGTCAACTCCACCGGTGACGATTCAGGCGAAGATTTCTACGAGATGATCGAAGCGCCTAAGTTCGTCGACTTCACCGTTTCCGATCACTACGTTCCCGATGATCGCTACTGGTTCTGCTCCCGAGTCGGGTGTGAAGAGGCACATCCAGAGGAAATGGACTCTGATGTCGTTTACAAAAACTTTGTAATGCGGGTAATGGCAGCGAGAAGTCCGAATGTACGGCTTCAGAGAGTTAGAAGGAACCTGAAATGCCCACTTACAGCTCCTCCGAAGTCTTCGAAGTCTAGAATGGCAAGGCTAGCTCTGATTTCTTCCATTTCCAAAAGGATAGCGGATTCAAGAGTTAAATCTAGATTGCCTACCACCAAGCCTGCTGCAACTGCGAACGTAAAGCCAAAGCAAACTCATGCCAAGGCAATGACCACTCCAAGGAACAGGAAGCTTAACTCCAATACCAATGCTTTTCTGAGTGTTAAAAATTCTAAGACAATATCAGCTGAAGAGCCAAAGACTACCAAAGTAGCTAAGGCTTTGTTCTTTCAGTCTCCGAAGAAAGATACAAAAAAGAGAACTTCAACAGAAGTGAATACCTCTGTGAAAACTATATGTGCAGCAATGAAGAAACTCGAAATTAACAGTGCAAATAAGAATGTCTTAGGCCATGAGAAAAATGTATTACGGGATGGACAGTCATTGCCCAAGGATGTTCCGCGGAAACAGTTCAGAGGACGTGAGGTGAAGAGCCGAGTTTTTGATTCATTACGAACACACGGTTGCAAACACCAGGATGCCAAATCTGTAAGGGTTTTGAAGAGGAGAAGCAAAGAAAGGAAGATAAAGCCGCCTCTTCCCCAGCACGTTGCTCCAGAAAAAGTTGATGAGGATGCCAGTGATATGGATATTGATGTAAAATCAAGGCAAGTTTCAATGCAAGGGTGCTGTTTGTCAGTTTCTTCTAAGGGTAAAGACGAAAATCCAGATGGACTTTCAAGACCTGAAGATTCAGATAATTTATCCAAAGATTTTGATAGAACTTCCATTTCAAATTATGAGGAGAGAATTTCGGAAAAAAGTGATGCCGAGGTTGTCCAATGTAAAGTAGAGGATAAGAAGAACCAATTATACTATCACGAAGATCAAGTCAAACCAGGTGTGTTAGAGATGAATATTTTAGAACTTCTGTTGAGTGATGATAAAGAAAATGTAGCTGAAATTAGTGATGGTAATCGAGATGAAAAGGTTTTACAAATTGTGGAGCCTCTGAACAGTAATTCTGATGATGATACTAAAGTATCAAATCCAGAGAAAAATTCAGAAGCAATTGATTTCAACTCAGTTCTGTGTGAAGTGGAGCCTGAGAAGAATAACAAATGCAATCGTGAAGGGAGAATGAAATCAGGGGAAGTACAAAAGAATATCTCAAAACTCGAGAGTGATGACAAAGAAAATGTTGTGAGTGCAAGTAAGGATAATGCAGTACCCTCTGATGATGATATAGAGCATGAGAGTGAAACCACCACAGATGAAAATGTTGCACCTAATGACAACAGGGAAGACAACTCTCACGACCAGTCTGCAACAGTGGCATTTGGCAAGCTTGTGAGATCTAATGCGGCAAAGGTCAAAGAAGTATTAAAGAAGACCGTGAAGGAGAAATCTACTCCTGCTACAGTTGGTTCTCATGGGCTGAAACCCAGCAGACCAAAGTCCACGAATCCCAAGCCATTCAGACTAAGAACCGATGAAAGAGGTGTACTTAGGGAAGCAAACTTGGGGAAAAAGCTTCATTGTCCTTTGAAAGACATCACTGCATCTCGAAGGCATCATGGGGACAAGTTGCAAAGAAAAAATAATCAATGCACGAATCAAAATTCTGAATGTGAAAATCATGTTGAGGAAGAACATGAACAAAGGAGGTTAGAGAACAAATTCCCAGACGATCCACAAGGTGGAACAATACCAGATTCCTCAAACAACAAAAAGGGAGATTCTGAAGACAAGTTATGTACATTGGACTCACAAAATTGTTTTGCTTTAAAACACCAGAAACCAAGACATTGTCGTCAGCTTGAACCTGGCAATAAGAGAGCAACCAAGACAACAGAGGCCAACTTGAAAAGGGCTAACTTAAAAAAGATACAGCAAAGAGTTAGGAAGCCTAGAAGGGATATATCATCCAAAGAAGAATTAACTTCTCTGGTACCTAGCCAACACAATGCAAGGAAAGAAACCTCTCTGAAGATATCGAGTCTCAAAGATGCTAGAAAACCATCAGAGGCATTATCTCGAAAAAGGAGCCCTGCTGCAACTATTCCAAAGGAGCCAAATCTTCATGGAAATCATCTACCAAGGAGAGCTGCTCAAGAAAATTGGCTAAGGTGA 2403 41.36 MDENTQAVNSTGDDSGEDFYEMIEAPKFVDFTVSDHYVPDDRYWFCSRVGCEEAHPEEMDSDVVYKNFVMRVMAARSPNVRLQRVRRNLKCPLTAPPKSSKSRMARLALISSISKRIADSRVKSRLPTTKPAATANVKPKQTHAKAMTTPRNRKLNSNTNAFLSVKNSKTISAEEPKTTKVAKALFFQSPKKDTKKRTSTEVNTSVKTICAAMKKLEINSANKNVLGHEKNVLRDGQSLPKDVPRKQFRGREVKSRVFDSLRTHGCKHQDAKSVRVLKRRSKERKIKPPLPQHVAPEKVDEDASDMDIDVKSRQVSMQGCCLSVSSKGKDENPDGLSRPEDSDNLSKDFDRTSISNYEERISEKSDAEVVQCKVEDKKNQLYYHEDQVKPGVLEMNILELLLSDDKENVAEISDGNRDEKVLQIVEPLNSNSDDDTKVSNPEKNSEAIDFNSVLCEVEPEKNNKCNREGRMKSGEVQKNISKLESDDKENVVSASKDNAVPSDDDIEHESETTTDENVAPNDNREDNSHDQSATVAFGKLVRSNAAKVKEVLKKTVKEKSTPATVGSHGLKPSRPKSTNPKPFRLRTDERGVLREANLGKKLHCPLKDITASRRHHGDKLQRKNNQCTNQNSECENHVEEEHEQRRLENKFPDDPQGGTIPDSSNNKKGDSEDKLCTLDSQNCFALKHQKPRHCRQLEPGNKRATKTTEANLKRANLKKIQQRVRKPRRDISSKEELTSLVPSQHNARKETSLKISSLKDARKPSEALSRKRSPAATIPKEPNLHGNHLPRRAAQENWLR* 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4677020 4681015 - CsaV3_7G007510.1 Csa07g00652 536215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00652 800 Coils Coil 620 640 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 609 673 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 581 596 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 135 155 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 688 707 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 634 652 - -
Csa07g00652 800 PANTHER NEUROFILAMENT HEAVY PROTEIN 4 414 - -
Csa07g00652 800 PANTHER NEUROFILAMENT HEAVY PROTEIN 435 795 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 691 707 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 736 751 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 719 800 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 323 351 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 553 596 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 752 769 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 287 303 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 331 351 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 269 303 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 481 530 - -
Csa07g00652 800 MobiDBLite consensus disorder prediction 500 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00652 - - - csv:101210501 1582.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g820 . . . . . Bpe12g00727 . . Cmo19g00528 Cmo11g01438 . . . . Sed10g1931 Cpe04g00342 Cpe15g00411 Bhi05g00992 Tan02g1082 Cmetu01g1396 . Hepe02g0673 . . Cla02g00723 Cam02g0771 Cec02g0767 Cco02g0798 Clacu02g0765 Cmu02g0758 Cre02g1073 . . . Cone10ag1074 Lsi03g00640 Csa07g00652 . Cme01g00151 . . Bda15g00474 . . . . Bma08g00023 . . . Cma11g01685 Cma19g00515 Car11g01155 Car19g00390 . . . . . . . . . . . . . . . . . . Chy01g00160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008141 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00652 Csa_Chr07 FPKM 5.37193 0.0 3.107097 2.395458 9.799541 12.461955 8.241609 1.462543 0.59998 4.078908