Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00657 ATGACATCTACGACTAAGTTTGTTTTTGCATTTTGTGTTGTTGGACTATTCCTAATCTTAGCTCCAATATCTCCCACCCTTGCAAACAGCACCCCCCAGGACTTCGTCGATGCCCATAATGCCATCCGTGCCAAGTATGGCGTCGGTCCGGTCACTTGGAACAAAACCATAGCCAGTTATGCTGAAAAATATGCCAAAACTAAAACCGCTACCTGCGAGATGGAGCATTCTATGGGACCTTATGGAGAAAACTTGGCCGAAGCATTTGAGAAGACAACAGCAGAATTGACAGTGAACTATTGGGCTAGTGAGGATAAATTTTATGACCATAAATCAAACAAGTGTGTTGAGGAAGAGTGCGGCCATTTCCTTCAAATTGTGTGGAAGGACACAACATCGATTGGTTGTGCAGAAGTTAAGTGCAACAACAACTATATTTTCACTATTTGCAACTATTATCCTCCAGGAGGGTATCCTGACCAACTTCCATACTGA 495 43.03 MTSTTKFVFAFCVVGLFLILAPISPTLANSTPQDFVDAHNAIRAKYGVGPVTWNKTIASYAEKYAKTKTATCEMEHSMGPYGENLAEAFEKTTAELTVNYWASEDKFYDHKSNKCVEEECGHFLQIVWKDTTSIGCAEVKCNNNYIFTICNYYPPGGYPDQLPY* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4717004 4717945 + CsaV3_7G007560.1 Csa07g00657 536220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00657 164 CDD CAP_PR-1 32 164 - -
Csa07g00657 164 Pfam Cysteine-rich secretory protein family 36 152 IPR014044 -
Csa07g00657 164 PANTHER PATHOGENESIS-RELATED PROTEIN 1B 22 164 - -
Csa07g00657 164 SMART SCP_3 30 160 IPR014044 -
Csa07g00657 164 PRINTS Allergen V5/Tpx-1 family signature 51 69 IPR001283 -
Csa07g00657 164 PRINTS Allergen V5/Tpx-1 family signature 97 110 IPR001283 -
Csa07g00657 164 PRINTS Allergen V5/Tpx-1 family signature 120 136 IPR001283 -
Csa07g00657 164 PRINTS Allergen V5/Tpx-1 family signature 147 160 IPR001283 -
Csa07g00657 164 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 22 164 IPR001283 -
Csa07g00657 164 Gene3D CAP 26 164 IPR035940 -
Csa07g00657 164 SUPERFAMILY PR-1-like 28 164 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00657 K13449 PR1; pathogenesis-related protein 1 - csv:101210746 352.443
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00657 Csa-Chr7:4717004 Csa07g00659 Csa-Chr7:4722230 1.91E-65 dispersed
Csa07g00656 Csa-Chr7:4714813 Csa07g00657 Csa-Chr7:4717004 1.35E-67 tandem
Csa07g00657 Csa-Chr7:4717004 Csa07g00658 Csa-Chr7:4719160 2.10E-60 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g802 . . Bda06g01145 . . . . . Cmo19g00540 . . . . . . Cpe04g00339 Cpe15g00419 . . . . . . . Cla02g00713 Cam02g0763 Cec02g0761 Cco02g0787 Clacu02g0754 Cmu02g0748 Cre02g1065 . . . . Lsi03g00627 Csa07g00657 . Cme01g00145 . . . . . . . . Sed07g1155 . . Cma11g01688 . . . . . Bhi11g01091 Tan01g0594 Cmetu07g1308 . . . . . . . . . . . Lsi03g00997 . Chy01g00154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004442 0 2 0 0 0 2 0 2 2 1 1 2 4 1 2 3 2 0 2 2 1 0 0 1 1 1 8 1 2 0 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00657 Csa_Chr07 FPKM 2.315887 3.487886 0.566397 0.752696 0.0 0.208168 0.0 0.0 0.29811 0.152477